Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g346 ATGTCTCCAGAGTATGGAATTGATGGCAAATTTTCAGCGAAATCAGATGTCTTCGGTTTTGGTGTGCTTCTGTTGGAGATAGTAAGTGGCAAAAAGAACAGGGGATTTAGTCATCCACATCACCACCACAATCTTTTGGGACATGCATGGATGCTTTGGAATGAAGACAAGGCCTTGGAACTGATGGATGCATGTCTCAGGGATTCATGTGTTGAGTCTCAAGTCCCAAGATGTATTCAAGTGGACTTATTTTGTGTTCAAAAACTCCCAGCCAACAGGCCAACCATATCATCGGTAATTTTCACGTTGGGTCATGAGGAAGCAGTGTTGCCTCAACCTAAACAGCCCGGTTTCTTCAGAGAAAGAAGTTCCGTTGATGATGAAGATGCCATACAGAAAATGAAATTACTGGAAAACCCAATTGAGGGTTCATATGGGGTTCTAAGTATTGGAAATGATGGCAATCTAGCTCTCCTCAACAAAACAAAGGGCATTATCTGGTCATCAAGTTCTTCGAGAGGGGCTGAAAATCCAACTGCACAGCTATTAGAGACTGGAAATCTTGTTCTTAGAGACGAGAGTGATGTAGATCCAGAGATCTATACATGGCAAAGCTTCGATTTCCCCTGTGACACACTGCTTGCAGGCATGAAGTTTGGATGGAACTTGAAAGATGGCCAAAATCGATATCTAACGTCTTGGAGAAACGCCAGTGACCCAGCACCCGGAGACTTCACTTGGCGAATCGACATTGTTGGGTTACCTCAAATGGTTCTTAGGAAGGGATCAGAGAAGATGTTCCGTAGTGGGCCATGGAATGGATTAAGTTTTAATGGTCTTCCATTGATTAAGAAGACATTTTTTACATCTTCTTTGGTGGACAATGCAGATGAGTTCTACTATTCGTACGAGCTTGACGACAAATCGATTATAACAAGACTTACTCTGGATGAACTGGGAATCTACCAGCGCCTGGTGTTGAGCAAAACCAGCAAGAAGTGGGATATTGTGTATCCACTGCAGGATGATTTGTGCGATGACTATGGCCGCTGTGGTGCTAACAGCATTTGCAGAATTAACGATCGGCCTATTTGTGAGTGCTTGGAAGGGTTTGTTCCAAAATCACAGGAGGAATGGGAATTTCAAAATTGGACCAGTGGCTGCATTAGGAGGACACAGTTGGACTGCCAAAAGGGAGAAGGATTTATGGAACTTGAAGGGGTCAAACTGCCTGACCTGTTGGAATTCTGGGTGAGCAAGAGCATGACCCTTAAGGAATGTGAGGAGGAGTGCTTGAGGAACTGTTCTTGCACAGCTTACACTAATTCAAATATTAGTGAGGGAGGCAGTGGTTGCTTGATCTGGTTTAGGGATCTGATCGATATCCGAGAGTTCCATGAAGATAATAAGCAGAATATCTACATCCGAATGCCAGCTTCAGAACTAGAGTTGATGAATGGTTCCAGTCAAAGCAAGAAACGCTTGGTGGTTGTGGTGGTCTCATCTACTGCTTCTGGAGTTTTCATCTTGGGCTTGGTACTCTGGTTTATAGTTCGGAAGAGAAAGAAAAGAGGTTCAGAAACAGAAAAGGAAGACCTGGAGCTGCAGTTGTTTGATCTGGCTACTATTTCAAGTGCTACTAATAACTTCTCTGATTCAAATTTGATTGGGAAGGGTGGTTTTGGACCAGTTTACAAGGGTACCCTGGCATCAGGACAAGAAATTGCAGTAAAAAGGCTTTCAAACAATTCAGGACAAGGCTTTCAAGAGTTCAAGAATGAAGTTATTTTGATTGCCAAACTTCAACATCGCAATCTTGTGAGGCTTTTGGGCTATTGCGTTGAAGAAGAAAGAATGCTGGTCTATGAATATATGCCCAACAAAAGCTTGGACTGTTTTATTTTTGATCAGGAAAGAAGCATGCTACTGAATTGGCCAAGGCGATTTGACATTGTCATGGGAGTTGCTCGTGGACTCCTTTATCTCCACCAAGACTCTAGATTGAGAATCATCCATAGAGATCTCAAAACCAGTAATATATTACTTGACAGTGAGCTAAACCCCAAAATTTCAGACTTTGGCATAGCAAGAGTTTTTGGGGGACAACAAACGGAAGCAAAAACAAAGCTAGTAATTGGAACATATGGCTATATGTCTCCAGAGTATGCAATTGATGGCAAATTCTCAGTAAAATCCGACGTCTTCAGTTTTGGTGTGCTTTTGTTGGAGATAGTGAGTAGCAAAAAGAACAGGGGGTTTTGTCATCCAGATCACCACCACAATCTTTTGGGACATGCATGGCTGCTTTGGAATGAACGCAAGACCATGGAACTGATGGATGCAGGCCTGAAGGATTCATGCATTGAGTCTCAAGTACTAAGATGCATTCAAGTGGGCTTATTATGTGTTCAGAAACTCCCAGTAGACAGGCCAACAATGTCATCTATAATTTTCATGTTGGGTAATGAGGAAGCAACATTGCCTCAACCTAAACAGCCCGGTTTCTTCTTTGAAAGAAGCTCTGAAGGAGATGACAAAGGATGTTACACAGAAAATACAGTTACTCTGACAATTCTTGAAGCTAGATAG 2589 42.53 MSPEYGIDGKFSAKSDVFGFGVLLLEIVSGKKNRGFSHPHHHHNLLGHAWMLWNEDKALELMDACLRDSCVESQVPRCIQVDLFCVQKLPANRPTISSVIFTLGHEEAVLPQPKQPGFFRERSSVDDEDAIQKMKLLENPIEGSYGVLSIGNDGNLALLNKTKGIIWSSSSSRGAENPTAQLLETGNLVLRDESDVDPEIYTWQSFDFPCDTLLAGMKFGWNLKDGQNRYLTSWRNASDPAPGDFTWRIDIVGLPQMVLRKGSEKMFRSGPWNGLSFNGLPLIKKTFFTSSLVDNADEFYYSYELDDKSIITRLTLDELGIYQRLVLSKTSKKWDIVYPLQDDLCDDYGRCGANSICRINDRPICECLEGFVPKSQEEWEFQNWTSGCIRRTQLDCQKGEGFMELEGVKLPDLLEFWVSKSMTLKECEEECLRNCSCTAYTNSNISEGGSGCLIWFRDLIDIREFHEDNKQNIYIRMPASELELMNGSSQSKKRLVVVVVSSTASGVFILGLVLWFIVRKRKKRGSETEKEDLELQLFDLATISSATNNFSDSNLIGKGGFGPVYKGTLASGQEIAVKRLSNNSGQGFQEFKNEVILIAKLQHRNLVRLLGYCVEEERMLVYEYMPNKSLDCFIFDQERSMLLNWPRRFDIVMGVARGLLYLHQDSRLRIIHRDLKTSNILLDSELNPKISDFGIARVFGGQQTEAKTKLVIGTYGYMSPEYAIDGKFSVKSDVFSFGVLLLEIVSSKKNRGFCHPDHHHNLLGHAWLLWNERKTMELMDAGLKDSCIESQVLRCIQVGLLCVQKLPVDRPTMSSIIFMLGNEEATLPQPKQPGFFFERSSEGDDKGCYTENTVTLTILEAR* 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4516281 4525721 + Vvi19g346 Vvi19g346 781845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g346 862 Gene3D - 126 206 IPR036426 -
Vvi19g346 862 Pfam PAN-like domain 396 462 IPR003609 -
Vvi19g346 862 PANTHER - 1 132 - -
Vvi19g346 862 PANTHER - 138 857 - -
Vvi19g346 862 SMART serkin_6 550 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g346 862 ProSiteProfiles PAN/Apple domain profile. 396 478 IPR003609 -
Vvi19g346 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 670 682 IPR008271 GO:0004672|GO:0006468
Vvi19g346 862 Pfam D-mannose binding lectin 138 235 IPR001480 -
Vvi19g346 862 Gene3D Transferase(Phosphotransferase) domain 1 625 831 - -
Vvi19g346 862 Gene3D Transferase(Phosphotransferase) domain 1 1 111 - -
Vvi19g346 862 Gene3D Phosphorylase Kinase; domain 1 514 624 - -
Vvi19g346 862 Pfam Protein tyrosine and serine/threonine kinase 554 817 IPR001245 GO:0004672|GO:0006468
Vvi19g346 862 Pfam Protein tyrosine and serine/threonine kinase 1 100 IPR001245 GO:0004672|GO:0006468
Vvi19g346 862 Pfam Domain of unknown function (DUF3403) 822 862 IPR021820 GO:0004674
Vvi19g346 862 CDD STKc_IRAK 556 820 - -
Vvi19g346 862 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 1 132 - -
Vvi19g346 862 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 138 857 - -
Vvi19g346 862 Pfam S-locus glycoprotein domain 267 375 IPR000858 GO:0048544
Vvi19g346 862 ProSiteProfiles Protein kinase domain profile. 550 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g346 862 ProSiteProfiles Bulb-type lectin domain profile. 80 203 IPR001480 -
Vvi19g346 862 SUPERFAMILY Protein kinase-like (PK-like) 1 105 IPR011009 -
Vvi19g346 862 Gene3D Hepatocyte Growth Factor 393 479 - -
Vvi19g346 862 SMART ntp_6 397 477 IPR003609 -
Vvi19g346 862 SUPERFAMILY Protein kinase-like (PK-like) 533 820 IPR011009 -
Vvi19g346 862 SMART blect_4 98 209 IPR001480 -
Vvi19g346 862 SUPERFAMILY alpha-D-mannose-specific plant lectins 138 240 IPR036426 -
Vvi19g346 862 CDD PAN_AP_plant 392 478 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76434 PF07714 PK_Tyr_Ser-Thr 2.70E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g346 - - vvi:100265866 1014.6