Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g347 ATGGATGCTCTTGCAAGACTAGTGATCATCTTCTCTTCTGTACTCTTCATCGTACCAATTTCCATTGCTGTAGATACAATAACAGTAAATCAACCCATCAGATATGGTGAAACCATAATTTCAGCTGGTGGGAGCTTTGAACTGGGTTTTTATACTCCAGAGAATTCGAAGAATCAATACTTGGGGATATGGTACAAGAAGGTGACTCCTCGGACAGTGGTATGGGTTGCCAACGGAGACTTCCCACTCACTGATTCATTGGGAGTTTTGAAGGTCACAGACCAGGGAACTCTTGTTATTCTCAATGGCACTAATAGCATCATTTGGTCTTCTAATGCATCACGATCTGCACAGAATCCAACTGCCCAGCTTTTGGAGTCTGGAAATCTTGTATTGAAAAATGGAAATGATGATGACCCAGAAAATTTCTTATGGCAGAGCTTTGATCATCCATGCAGTACTCTTCTACCAAACATGAAGCTTGGAAGGAACAAGTCAACAGGCCAGGAATGGTACCTATCATCAAGTAAGAGTACCGATGATCCATCCAAGGGTAATCTTACTTATCGGCTTGATCCCCATGGCTATCCTCAACTTCTCAAGAGGAATGGGCTGATTCTGACGTTTTGCTCTGGACCATGGAATGGTCTCCGTTTTAGCGGGTTTCGAGCATTAGCAGGGAAATCAATTTATAAACATGTTTTTACTTTTAATGAAAAGGAGATGTATTATACATATGAACTTCTTGACAGCTCTGTTGTTTCAAGGTTGGTGCTAAATTCAAATGGTGATGTGCAACGCCTCACATGGACAGATGTTACTGGTTGGACTGAATACTCGACCATGCCGATGGATGACTGCGATGGTTATGCATTCTGTGGCGTGCATGGCTTCTGTAATATAAACCAAGTTCCAAAATGTGGTTGCTTGGACGGTTTTCAGCCAAATTTCCCAAACAACTGGGAGATGGGGGTTTGGTCAAATGGATGTTTTCGCAGTAGGCCGTTGGATTGTCAGAGAGGAGAATGGTTTAAAAAGTACTCTGGTAAAATTCCACCTTTTGATCTAGAATTACCATTATTTGACTTGGCTACAATATTGAATGCCACCAATAACTTTTCAATTGAGAATAAGCTTGGAGAGGGTGGTTTTGGACCTGTTTACAAGGGTCTGTTGCAACAAGGGCAGGAAGTAGCTGTGAAGAGACTGTCAAAAGATTCCAGACAAGGACTTATTGAGTTCAAAACTGAAGTAATACACATTGCAAATCTTCAGCACCGAAATCTTGTGAAGCTTCTTGGATGTTGCATTCATGGCCAAGAAAAGATGCTGATCTACGAATACATGTCTAACAAAAGCTTGGAGTCCTTTATTTTTGATAAAAGGCGAAGCAAGGAACTAGATTGGCCTAAGCGCTTTCTTATTATCAATGGGATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCCAGACTGAGAATAATTCATAGAGATCTAAAAGCAGACAACATTTTGCTGGATAGTGAGATGGGCCCAAAAATTTCAGACTTTGGCATAGCAAGAAGTTTTGGAGGAAATGAAACTGAAGCAAATACAACTAAAGTAGTTGGAACATTAGGTTACATATCCCCGGAGTATGCAAGTGAAGGACTGTACTCAGTAAAGTCTGATGTTTTTAGCTTTGGTGTTATGGTGCTAGAGATTGTGAGTGGGAAGAGAAACAGAGGATTTTCTCACCCAGACCACCGCCTTAACCTTCTTGGACATGCATGGACACTTTATACAGAAGGTAGGTATTTAGAGCTGATGGACGCAATGGTGGGGGACACATTCCAACCATCTGAGGTGTTGCGATCGATCCATGTGGGTCTACTATGTGTACAACATTGTGCGGATGATCGACCAAGCATGTCTTCTGTGGTTCTGATGTTGAGCAGTGAGGTTGCATTGCCTCAGCCAAGAGAGCCTGGTTTTTTCTGTGATTGGAATTCCTCAAGGAATTGCAGATCATATTCAGGCACTGAAGCCATAACACTATTAGTGGCATGGTTCAAAGTAACAGACCTGGATCGGTACCTGTCATCATGGAAGACCACTGATGACCCTTCTATGGGTAATTTCACATATGAGCTTGATCCAAGTGGATTTCTTCAACTGATTCGGAGGAATGGCTCAGCTGTGACATTTCGCTCTGGATCCTGGAATGGTCTACGTTTCAGTGGCTTTCCTGCATTAAGGCCGAACCCTATTTACAAATATGCTTTTATTTTTAACGACAAGGAGATTTTTTATACTTATGAGCTTATTAACAGCTCTGTTGTTTCAAGGTTGGTGTTGAACTCAAATGGCTATGCGCAACGTTTAACATGGATTGATCAGACACATGGTTGGATAATTTTCTCTTCCGTACCAGTGAGGATAATTTATCTACATAGCAGCTCCAAAATGAAGAAAACAAGATGGGTCATTGTGGGCACTCTGGCAGTTATAATGGGAATGATTCTCCTAGGCCTTCTACTGACCTTGTGTGTCCTTAAGAAGAAAGGTAAACAACTCAATTCAGACATGACAATTCAGCAGCTAGAAGGCCAGAACGAGGATTTAAGGTTACCATTATTTGACTATGCTACCATATTAAATGCCACCAATAACTTTGGGATAGCGAACAAGGTTGGAGAGGGTGGTTTTGGACCTGTCTACAAGGGAATGTTGGAAACGGGGCAAGAAATAGCTGTGAAGAGACTGTCAAAAGATTCTAGGCAAGGACTTCATGAGTTCAAAAATGAAGTCGAATACATAGCCAAACTTCAGCACCGAAATCTAGTGAAACTTCTTGGATATTGCATTCATAACGAAGAAAAGATGTTGATTTACGAATACATGCCTAACAAAAGCTTGGACTCCTTTATTTTTGATGAAAGGCGAGGCATGGAACTAGATTGGCCTAAGCGCTGCCTCATTATCAATGGGATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCTAGACTCAGAATAATCCATAGAGACCTAAATGCAGGCAACATTTTGCTAGATAGTGAGATGAGCCCAAAAATTTCAGAGTTTGGCATGGCTGAAAGTTTTGGAGCAAATCAAATTGAAGCAAATACAGAAAGATTGGTTGGAACATTTGGTTACATGCCCCCAGAGAATGCAAGTGAAGGACTATACTCATTGAAGTCTGATGTTTTTAGCTTTGGTGTTTTGGTGCTGGAGATTGTGACTGGGAAGAGAAACAGAGGATTTTCGCACCCAGACCGCCGGCTTTGGTCAAATTGCTTCTTTCTCCACATTGACATGTTAAGACTTGATGGTCACCCTGGCAGTTCTGAGAATCGGTACCTGGGAATATGGTACAAGAAGATATCTACTGGGACAGTAGTTTGGGTGGCCGACAGAGATGTCCCATTAAACGATTCATCTGGAATTTTAAAGCTTGATGAACGGGGAACTCTAGTCCTTCTCAATAAAGCCAACATGACCATTTGGTCTTCCAATTCGTCAAGGTCAGTACAAAGCCCAGTTGCACAGCTCTTGGATACAGGAAATCTTGTTGTGAGAAATGAAAATGATAGTGACCCAGAAAACTTCCTTTGGCAAAGTTTTGATTATCCAGGGGACACTTTTCTACCAGGCATGAAGTATGGAAAGAACCTGATAACTGGCCTGGATAGTTATCTAACATCATGGAAGAGCACAGATGATCCTTCAACTGGTGATTTCACTAACAGGCTCGATCCTAGAGGATTTCCACAAATGTTTCTAAAGGAGGGTTCAGTTGTGACGTTTCGATCAGGTCCCTGGAATGGTCTTCGGTTTAGTGGTATGCCTAATTTAAAACCAAATTCAATTTATACCTTTCATTTTGTCTTGAATCAAAAGGAGATATACTACACTTATGAACTTATCAACAGCTCAGTTGTGACACGGATGGTATTGAGTCCAAATGGTGTTCTGCAGGACTACACATGGATTGATCGCAGGCAGGGCTGGCTCCTATACTTGACTGCACAGATGGATAACTGTGACCGCTATGCATTATGCGGTGCATATGGTAGTTGTGACATCAACAACTCCCCTGCATGTGGATGTTTGAAAGGCTTTGTGCCAAAACACCCAAATGATTGGAATGTTGCAGATTGGTCAGGTGGTTGTGTTCGTAGGACTCGATTGAATTGTCAAAATGGAGATGGTTTTCTGAAGTATCCTGGAGTAAAATTGCCAGACACACAAGATTCCTGGTTTAATATGACAATGAATCTTAAGGAATGCAAGATGAAGTGCTTGAAGAACTGTAATTGTACAGCTTATGCAAATTCAGATATCAGAAATGGAGGGAGTGGATGCGTGCTTTGGTTTGGCAACCTGATTGATATTAGAGAGTACAATGAAAATGGGCAAGATCTTTATGTAAGGATGGCTGCCTCAGAATTAGAGGAATATGAAAGCTCTGACCAGAAGAAACTAGTGAAGATCATAGTCATCCCCATAGGTCTTGCAGGACTCATTCTCCTAGTCATATTTGTGATCTTGCATGTCTTGAAGAGGAAGAGACTTAAGAAGAAGGCCCCTTTGGGAGAAGGTAACTCATCTCAGATAAATACATTTTGTTCATTGATAACAATGGGGCACAATCCAGAGAGAGATCACACAAATGAAAGTGAGAAGGAAGATTTGGAGTTACCATTATTTGACTTTGACACAATAGCTGAAGCCACTGACAACTTTTCCAGAAGCAATAAACTTGGACAGGGTGGTTTTGGACCTGTTTACAAGGGTATGTTGAGAGGGGGACAAGAAATAGCTGTGAAGAGGCTCTCAAAGAATTCAAGACAAGGACTTGATGAGTTCAAGAATGAAGTTTTATGCATTGCCAAACTTCAACACCGGAACCTTGTGAAGCTTCTAGGATATTGCATTCAATATGAAGAAAAGATGCTGATCTATGAGTACATGCCCAACAAGAGCTTGAACTCCTTTATTTTTGATCAAACACAAAGCATGTTACTGGATTGGCCCAAGCGTTTCCACATTATCAAAGGGATTGCTCGTGGACTTCTCTATCTTCATCAAGACTCCAGACTGAGAATTATCCATAGAGATCTCAAAGCCAGCAATATTTTATTAGATCAGGAGATGAACCCCAAGATCTCAGACTTTGGCATGGCCAGAAGTTTTGAAGAAAATGAAACAGAAGCAAATACAACTAGAGTAGTGGGAACCTACGGGTACATGTCCCCAGAGTATGCAGTTGATGGCCTCTTCTCAGTAAAATCCGATGTCTATAGCTTTGGGGTTTTGGTGCTAGAGATTGTGAGTGGAAAGAGAAATAGAGGGTTCTGTGATCCAGATCACCACCTCAACCTTCTTGGACATGCATGGAGACTCTACAGAAAAGGCAGGTCTATCGAACTGACTGATGCATCTATACAGCAATCATGCAATCCACTCGAAGTGCTACAATCAATCCATGTGGGACTATTGTGTGTGCAACAAAGCCCAGATGATAGGCCAAGTATGTCATCTGTGGTTATGATGTTGGGTAGTGAGATTGCATTGCCTCAGCCAAGAGAGCCTGGTTTTTTCGTTGCAAGGAGAATGATTGAAGCAGCAGATTCTTCTTCAGGCATATATGAGCCATGTTCAGTCAATGATATAACTGTTACATTTTTAGCTGCTCGATAA 5706 41.48 MDALARLVIIFSSVLFIVPISIAVDTITVNQPIRYGETIISAGGSFELGFYTPENSKNQYLGIWYKKVTPRTVVWVANGDFPLTDSLGVLKVTDQGTLVILNGTNSIIWSSNASRSAQNPTAQLLESGNLVLKNGNDDDPENFLWQSFDHPCSTLLPNMKLGRNKSTGQEWYLSSSKSTDDPSKGNLTYRLDPHGYPQLLKRNGLILTFCSGPWNGLRFSGFRALAGKSIYKHVFTFNEKEMYYTYELLDSSVVSRLVLNSNGDVQRLTWTDVTGWTEYSTMPMDDCDGYAFCGVHGFCNINQVPKCGCLDGFQPNFPNNWEMGVWSNGCFRSRPLDCQRGEWFKKYSGKIPPFDLELPLFDLATILNATNNFSIENKLGEGGFGPVYKGLLQQGQEVAVKRLSKDSRQGLIEFKTEVIHIANLQHRNLVKLLGCCIHGQEKMLIYEYMSNKSLESFIFDKRRSKELDWPKRFLIINGIARGLLYLHQDSRLRIIHRDLKADNILLDSEMGPKISDFGIARSFGGNETEANTTKVVGTLGYISPEYASEGLYSVKSDVFSFGVMVLEIVSGKRNRGFSHPDHRLNLLGHAWTLYTEGRYLELMDAMVGDTFQPSEVLRSIHVGLLCVQHCADDRPSMSSVVLMLSSEVALPQPREPGFFCDWNSSRNCRSYSGTEAITLLVAWFKVTDLDRYLSSWKTTDDPSMGNFTYELDPSGFLQLIRRNGSAVTFRSGSWNGLRFSGFPALRPNPIYKYAFIFNDKEIFYTYELINSSVVSRLVLNSNGYAQRLTWIDQTHGWIIFSSVPVRIIYLHSSSKMKKTRWVIVGTLAVIMGMILLGLLLTLCVLKKKGKQLNSDMTIQQLEGQNEDLRLPLFDYATILNATNNFGIANKVGEGGFGPVYKGMLETGQEIAVKRLSKDSRQGLHEFKNEVEYIAKLQHRNLVKLLGYCIHNEEKMLIYEYMPNKSLDSFIFDERRGMELDWPKRCLIINGIARGLLYLHQDSRLRIIHRDLNAGNILLDSEMSPKISEFGMAESFGANQIEANTERLVGTFGYMPPENASEGLYSLKSDVFSFGVLVLEIVTGKRNRGFSHPDRRLWSNCFFLHIDMLRLDGHPGSSENRYLGIWYKKISTGTVVWVADRDVPLNDSSGILKLDERGTLVLLNKANMTIWSSNSSRSVQSPVAQLLDTGNLVVRNENDSDPENFLWQSFDYPGDTFLPGMKYGKNLITGLDSYLTSWKSTDDPSTGDFTNRLDPRGFPQMFLKEGSVVTFRSGPWNGLRFSGMPNLKPNSIYTFHFVLNQKEIYYTYELINSSVVTRMVLSPNGVLQDYTWIDRRQGWLLYLTAQMDNCDRYALCGAYGSCDINNSPACGCLKGFVPKHPNDWNVADWSGGCVRRTRLNCQNGDGFLKYPGVKLPDTQDSWFNMTMNLKECKMKCLKNCNCTAYANSDIRNGGSGCVLWFGNLIDIREYNENGQDLYVRMAASELEEYESSDQKKLVKIIVIPIGLAGLILLVIFVILHVLKRKRLKKKAPLGEGNSSQINTFCSLITMGHNPERDHTNESEKEDLELPLFDFDTIAEATDNFSRSNKLGQGGFGPVYKGMLRGGQEIAVKRLSKNSRQGLDEFKNEVLCIAKLQHRNLVKLLGYCIQYEEKMLIYEYMPNKSLNSFIFDQTQSMLLDWPKRFHIIKGIARGLLYLHQDSRLRIIHRDLKASNILLDQEMNPKISDFGMARSFEENETEANTTRVVGTYGYMSPEYAVDGLFSVKSDVYSFGVLVLEIVSGKRNRGFCDPDHHLNLLGHAWRLYRKGRSIELTDASIQQSCNPLEVLQSIHVGLLCVQQSPDDRPSMSSVVMMLGSEIALPQPREPGFFVARRMIEAADSSSGIYEPCSVNDITVTFLAAR* 1902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4537165 4555213 - Vvi19g347 Vvi19g347 781846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g347 1901 Coils Coil 1900 1901 - -
Vvi19g347 1901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Vvi19g347 1901 CDD STKc_IRAK 379 644 - -
Vvi19g347 1901 ProSiteProfiles Protein kinase domain profile. 885 1169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g347 1901 ProSiteProfiles Protein kinase domain profile. 1583 1860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g347 1901 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 1114 1898 - -
Vvi19g347 1901 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 12 350 - -
Vvi19g347 1901 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 847 1095 - -
Vvi19g347 1901 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 355 670 - -
Vvi19g347 1901 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 686 802 - -
Vvi19g347 1901 ProSiteProfiles PAN/Apple domain profile. 1400 1481 IPR003609 -
Vvi19g347 1901 Gene3D Hepatocyte Growth Factor 1397 1480 - -
Vvi19g347 1901 PANTHER - 355 670 - -
Vvi19g347 1901 PANTHER - 686 802 - -
Vvi19g347 1901 PANTHER - 12 350 - -
Vvi19g347 1901 PANTHER - 1114 1898 - -
Vvi19g347 1901 PANTHER - 847 1095 - -
Vvi19g347 1901 SUPERFAMILY Protein kinase-like (PK-like) 355 672 IPR011009 -
Vvi19g347 1901 Pfam Protein tyrosine and serine/threonine kinase 1586 1853 IPR001245 GO:0004672|GO:0006468
Vvi19g347 1901 Pfam Protein tyrosine and serine/threonine kinase 888 1084 IPR001245 GO:0004672|GO:0006468
Vvi19g347 1901 Pfam Protein tyrosine and serine/threonine kinase 374 640 IPR001245 GO:0004672|GO:0006468
Vvi19g347 1901 SUPERFAMILY Protein kinase-like (PK-like) 1566 1854 IPR011009 -
Vvi19g347 1901 SMART serkin_6 885 1171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g347 1901 SMART serkin_6 1583 1854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g347 1901 SMART serkin_6 373 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g347 1901 ProSiteProfiles Bulb-type lectin domain profile. 1087 1206 IPR001480 -
Vvi19g347 1901 Gene3D - 1114 1209 IPR036426 -
Vvi19g347 1901 Gene3D - 20 148 IPR036426 -
Vvi19g347 1901 SMART blect_4 1077 1212 IPR001480 -
Vvi19g347 1901 SMART blect_4 30 151 IPR001480 -
Vvi19g347 1901 Gene3D Transferase(Phosphotransferase) domain 1 961 1111 - -
Vvi19g347 1901 Gene3D Transferase(Phosphotransferase) domain 1 1659 1860 - -
Vvi19g347 1901 Gene3D Transferase(Phosphotransferase) domain 1 449 651 - -
Vvi19g347 1901 CDD PAN_AP_plant 1396 1481 - -
Vvi19g347 1901 SUPERFAMILY Protein kinase-like (PK-like) 869 1093 IPR011009 -
Vvi19g347 1901 CDD B_lectin 1114 1212 IPR001480 -
Vvi19g347 1901 Pfam PAN-like domain 1400 1466 IPR003609 -
Vvi19g347 1901 ProSiteProfiles Protein kinase domain profile. 373 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g347 1901 Gene3D Phosphorylase Kinase; domain 1 1556 1658 - -
Vvi19g347 1901 SMART ntp_6 1401 1480 IPR003609 -
Vvi19g347 1901 SUPERFAMILY alpha-D-mannose-specific plant lectins 1134 1243 IPR036426 -
Vvi19g347 1901 CDD B_lectin 30 151 IPR001480 -
Vvi19g347 1901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1704 1716 IPR008271 GO:0004672|GO:0006468
Vvi19g347 1901 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 216 IPR036426 -
Vvi19g347 1901 Pfam D-mannose binding lectin 72 177 IPR001480 -
Vvi19g347 1901 Pfam D-mannose binding lectin 1133 1238 IPR001480 -
Vvi19g347 1901 CDD STKc_IRAK 1589 1854 - -
Vvi19g347 1901 Gene3D Phosphorylase Kinase; domain 1 343 448 - -
Vvi19g347 1901 Gene3D Phosphorylase Kinase; domain 1 845 960 - -
Vvi19g347 1901 Pfam S-locus glycoprotein domain 729 804 IPR000858 GO:0048544
Vvi19g347 1901 Pfam S-locus glycoprotein domain 1270 1378 IPR000858 GO:0048544
Vvi19g347 1901 Pfam S-locus glycoprotein domain 210 316 IPR000858 GO:0048544
Vvi19g347 1901 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Vvi19g347 1901 Pfam Domain of unknown function (DUF3403) 1858 1901 IPR021820 GO:0004674
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76435 PF07714 PK_Tyr_Ser-Thr 9.00E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g347 - - vvi:100258925 1541.55