Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g35 ATGGGCATGGAGAGCCTTGTGGGAAGCCACTCAATCGAGAGATTATGGGTTCTAGTGAGAGTAATGAGGATTTTTGCCCTCATGTCTGTCTTGCAACGCCACCCAGGTCCATGCCCTCCGTGTAAGGCTTTTGCACCGCCTCAGTTGTGCCCTTCGGAGGAGAAATTTACCTGTGAGAAACCTTGTGGGCGGAAGAAGAACTGTGGAAGGCACTGTTGTAGTGAACGGTGTTGTCCTCTCTCTAATTCTGGCAACGTTCTCTCTGGTGATTGGGATCCGCACTTATGTTCAATGACATGTGGAAAGAAACTAAGGTGTGGACAACACTCTTGTGAAAATCTTTGTCATAGTGGCCATTGTCCTCCTTGCCTTGAAACAATCTTTATTGATTTAACATGTGCATGTGGGAGAACTTCAATCGCTCCTCCATTGCCTTGTGGTACCCCCACTCCATCATGTCAGCACCCATGCTCAATTCCTCAGCCATGTGGTCATTTATCTTCTCACAACTGCCACTTTGGAGACTGCCCACCTTATTCAATTCTTATAGCCAAGGAGTGCATTGGTGGACATGTGGTTCTCAAGAACATCCCTTGTGGGTCAATGGATATTAGATGTAACAAGCTTTGCAGCAAGACCAAACAATGTGGTATGCATGCTTGTAGGAGAACTTGTCACCCTTCTTGTGATTCTTCCTATGCATCTGGTTCTGGTTTGAAGTCTTCATGTGGCCAGACATGTGGTGCTTCGAGGAGAGATTGCAGGCATACATGCATTGCCCCTTGTCACCCTTCATCTCTTTGTCCTGATTCAAGATGTGATTTCCCTGTCACAATCACTTGTTCTTGTGGCCGAATAAGTGCAACTGTTCCTTGTGATGCTGGAGGCAGCAGTGTGGGCCGAAATGCGGGGATGATAATTAAGAAAGATATTTCACTACTACAAATTTACCAAAAAAGTGGACAGAATCCATCAATATTACATACTACTCCTTGCTTACTCCACACTCAAACCCAGTACGCTTCTCAAACCCGGAGAAAAATGGCACTCTCAACGACTCTTTTCAGATTTCCTCCGATCCCACTCCAACAGTTCCACCACACCTCTTCCACCAAAAGACTTCTCTACCCCCGGATCAGCCCCCAATTCCCCAAAATGCCTCTCACCGCCAAGGCTCTCCCTAACCCTGTCCCTGGATTTAGGGGGGCAGTTTCGGAAGCCATCGCTCTCATCCAATCGTCACCCGCCACGTGGAAGTCGGCTCTTCTCAACAACTTCCTCATCTTCATTGCCGGCGCTCCGATCCTCGTCTCCGGCCTCTCGCTATCCGGCATCGCCGCCGCCTTCTTGCTCGGGACGCTGACATGGCGCGCCTTTGGATCACCTGGGTTTCTGCTCGTGGCTACATACTTCGTTATTGGGACGGCAGCCACAAAGGTGAAAATGGCACAGAAAGAGGCTCAAGGGGTTGCTGAGAAGAGGAAAGGAAGAAGAGGGCCTGGTAGTGTTATTGGTTCTAGTGCTGCTGGTTGTGTTTGTGCTTTTCTTTCCATATATGGGGTAGGGGGAGAGGCATTTTTGCAGCTTTGGCAACTTGGATTTGTTGCCAGTTTCTGTACTAAACTGAGTGATACTGTCTCAAGTGAGATAGGCAAGGCATATGGGAAAACAACGTACCTAGTTACAACATTGAAGATAGTTCCAAGAGGAACAGAAGGGGCTGTAAGTGCTGAGGGAACCTCTGCTGGACTTTTAGCATCAATTCTTCTTGCTTTTGTTGGTTGTCTCATGGGTCAGATTGATGCAGTGGAAGCAGTAATATGTGTAGTAGCTGCCCAGATTGCTAACCTTGGTGAGAGCTTTATCGGTGCTGCACTCCAGGGGAAGGAAGGATTTCGATGGCTCAACAATGATGTGGTCAATGTAATCAATATATCCATGGGCAGCATTTTAGCAATCTTGATACAGAAAATACTCCGCGGATTTTAA 1989 47.66 MGMESLVGSHSIERLWVLVRVMRIFALMSVLQRHPGPCPPCKAFAPPQLCPSEEKFTCEKPCGRKKNCGRHCCSERCCPLSNSGNVLSGDWDPHLCSMTCGKKLRCGQHSCENLCHSGHCPPCLETIFIDLTCACGRTSIAPPLPCGTPTPSCQHPCSIPQPCGHLSSHNCHFGDCPPYSILIAKECIGGHVVLKNIPCGSMDIRCNKLCSKTKQCGMHACRRTCHPSCDSSYASGSGLKSSCGQTCGASRRDCRHTCIAPCHPSSLCPDSRCDFPVTITCSCGRISATVPCDAGGSSVGRNAGMIIKKDISLLQIYQKSGQNPSILHTTPCLLHTQTQYASQTRRKMALSTTLFRFPPIPLQQFHHTSSTKRLLYPRISPQFPKMPLTAKALPNPVPGFRGAVSEAIALIQSSPATWKSALLNNFLIFIAGAPILVSGLSLSGIAAAFLLGTLTWRAFGSPGFLLVATYFVIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIYGVGGEAFLQLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTLKIVPRGTEGAVSAEGTSAGLLASILLAFVGCLMGQIDAVEAVICVVAAQIANLGESFIGAALQGKEGFRWLNNDVVNVINISMGSILAILIQKILRGF* 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 375193 383468 - Vvi19g35 Vvi19g35 781534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g35 662 SMART znfxneu3 106 125 IPR000967 GO:0005634|GO:0008270
Vvi19g35 662 SMART znfxneu3 216 245 IPR000967 GO:0005634|GO:0008270
Vvi19g35 662 SMART znfxneu3 163 178 IPR000967 GO:0005634|GO:0008270
Vvi19g35 662 SMART znfxneu3 254 275 IPR000967 GO:0005634|GO:0008270
Vvi19g35 662 CDD NF-X1-zinc-finger 58 117 - -
Vvi19g35 662 Pfam Integral membrane protein DUF92 428 648 IPR002794 GO:0016021
Vvi19g35 662 CDD NF-X1-zinc-finger 153 201 - -
Vvi19g35 662 CDD NF-X1-zinc-finger 96 148 - -
Vvi19g35 662 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 53 314 IPR034078 GO:0003700
Vvi19g35 662 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 25 52 IPR034078 GO:0003700
Vvi19g35 662 CDD NF-X1-zinc-finger 243 292 - -
Vvi19g35 662 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 25 52 - -
Vvi19g35 662 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 53 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g35 K12236 NFX1; transcriptional repressor NF-X1 - vvi:100243596 612.838
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g35 . . . . . . . Bma13g00921 . Cmo04g00709 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00721 . Bda12g00811 . . . . . . . Cma04g00661 . . . . Cpe01g00596 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008594 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14419 PF01940 DUF92 6.90E-47 No_clan Vvi TF