Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g351 ATGAAGTTTGGAAGGAACACTGTGACAGGCTTAGATCGGTACTTATCTTCATGGAAGAGCACTGATGATCCTTCTAAAGGTAATTTTACATACCGGGTTGAGCCTAGTGGATTTCCACAACTGATTCTGAGGAGTGGCTTAGCTGTGACTTTTCGCTCTGGCCCATGGAATGGCCTTCGATTTAGTGGGTTTCCTGAAATAAGGTCAAATCCAGTTTATAAATATGCTTTTGTTGTGAATGAAGAGGAGATGTATTATACTTATGAGCTTGTTAACAGCTCTGTTATTTCGAGGCTGGTGTTAAATCCAAACGGATACGTGCAGCGTTTCACATGGATTGATCGAACACGTGGGTGGATCCTTTACTCATCTGCACAGAAGGACGACTGTGACAGTTATGCATTGTGTGGTGCATATGGCAGCTGCAACATTAACCATTCTCCAAAATGTACATGTATGAAAGGATTTGTGCCAAAGTTCCCCAATGAATGGAACATGGTGGATTGGTCAAATGGATGTGTTCAGAGCACTCCACTGGATTGTCACAAGGATGAGGGGTTTGTAAAGTACTCTGGTGTGAAACTGCCTGACACACGAAACTCCTGGTTTAATGAAAACATGAGTCTCAAGGAGTGTGCCTCTATGTGCTTAAGGAACTGCTCTTGCACTGCTTATGCAAACTCAGATATCAGGAATGGAGGAAGTGGATGCTTGCTCTGGTTTGGTGATTTGATTGATATCAGAGAGTTTGCTGAAAATGGACAAGAGTTGTATGTAAGGATGGCTGCATCAGAATTAGATGCCTTTTCTAGCTCAAATAGCAGCTCCAAGAAGAGACGAAAGCAGATCATTATCATCTCTGTATCAATTTTGGGGGTGCTTCTCCTAATCGTAGTCTTGACTTTGTACATTGTGAAGAAGAAGAAGCTAAAGAGAAACAGAAAAATTAAACACCATTTGAAAGGAGATGAAGCGAATGAAAGCCAAGAGCATCTAGAATTACCACTATTTAACTTGGCTGCATTACTGAGTGCTACTAATAACTTTTCAAGTGACAATAAGCTTGGAGAGGGTGGTTTTGGACCTGTCTACAAGGGAATATTGCAAGAAGGACAAGAAATAGCTGTAAAGAGACTGTCAAAACATTCTAGACAAGGACTAAATGAATTCAAAAATGAAGTTGAATCCATTGCGAAACTTCAGCATCGAAATCTTGTGAAGCTTCTTGGATGTTGCATTCATGGCAGTGAAAGAATGTTGATCTATGAATACATGCCCAACAAAAGCTTGGATTTCTTCATTTTTGATCCAATGCGAGGTGTGGTACTGGATTGGCCTAAGCGCTTTGTCATTATCAATGGGGTTGCTCGGGGGCTTCTTTATCTTCATCAAGACTCCAGACTAAGAGTCATCCATAGAGATCTCAAAGCCGAAAATGTTTTACTAGATAATGAGATGAGCCCAAAAATTTCAGACTTTGGCATAGCAAGAAGTTTTGGGGGAAATGAAACTGAAGCAAATACAACAAGAGTGGCTGGAACATTAGGTTACATGTCCCCAGAGTATGCAACTGAAGGATTGTATTCGACAAAATCAGATGTTTATAGCTTTGGTGTTTTGATGCTAGAGATTGTGACTGGGAAGAGGAACAGGGGATTTTTTCATCTAGACCACAGATATAACCTTCTTGGACATGCGTGGACACTCTATATGAAAGGTAGGTCTTTAGAACTTATCAATCCATCGATGGGGGATACCTGCAATCTATCTGAAGTGCTCCGCGCAATCAATGTGGGCCTACTGTGTGTACAACGTTTCCCCAATGATCGACCAAGCATGCATTCTGTGGTTCTGATGTTGGGGAGTGAGGGTGCACTGCCTCAGCCTAAAGAGCCTTGTTTTTTCACAGAAAAGAATGTAGTGGAAGCAAACCCTTTCCCAGGCGAGCACATGCTATATTCAGGAATAATTGGAAGCAAATTTTTACAAAAAATAACAATATTAATTAAAAAAATCACTTCAGCTAATTCAAAAAGTCTCATATTCAAAATGAAAACTAAGGCATCCATCCAAACAGTCCGCCGCATTCTTCATTTTCTTCTTCACTGCCACACTGATCCTAGACAAGCCCTAATCTCCTTTCTTCCACTTGCTCATAAATCTATTTCTCTTTTTCTCAGTCCCAATGAACGAGGCCATGGCTCCCTTTATACCGCAATTTCCATTGCAGCTTCTGATCGGAGAGCGGGATCCCTCTTCGAGGATCCGGACACAATCTTGTCTTCCGTGGTTCTTATGTTAGGGAGTGACGGTGCATTGCCTCAATCGAAGGCATACGCTCAATGCGAATTATTCCTCAGGAAAGCGCCATTTTCACACTATTGGACGCTGAATAGAAGAAATTTCATGTCCATATTTTGTTTTGTCTCTGGACTTTTTGAAGGAGACTATGCCAATTCTTAG 2463 41.29 MKFGRNTVTGLDRYLSSWKSTDDPSKGNFTYRVEPSGFPQLILRSGLAVTFRSGPWNGLRFSGFPEIRSNPVYKYAFVVNEEEMYYTYELVNSSVISRLVLNPNGYVQRFTWIDRTRGWILYSSAQKDDCDSYALCGAYGSCNINHSPKCTCMKGFVPKFPNEWNMVDWSNGCVQSTPLDCHKDEGFVKYSGVKLPDTRNSWFNENMSLKECASMCLRNCSCTAYANSDIRNGGSGCLLWFGDLIDIREFAENGQELYVRMAASELDAFSSSNSSSKKRRKQIIIISVSILGVLLLIVVLTLYIVKKKKLKRNRKIKHHLKGDEANESQEHLELPLFNLAALLSATNNFSSDNKLGEGGFGPVYKGILQEGQEIAVKRLSKHSRQGLNEFKNEVESIAKLQHRNLVKLLGCCIHGSERMLIYEYMPNKSLDFFIFDPMRGVVLDWPKRFVIINGVARGLLYLHQDSRLRVIHRDLKAENVLLDNEMSPKISDFGIARSFGGNETEANTTRVAGTLGYMSPEYATEGLYSTKSDVYSFGVLMLEIVTGKRNRGFFHLDHRYNLLGHAWTLYMKGRSLELINPSMGDTCNLSEVLRAINVGLLCVQRFPNDRPSMHSVVLMLGSEGALPQPKEPCFFTEKNVVEANPFPGEHMLYSGIIGSKFLQKITILIKKITSANSKSLIFKMKTKASIQTVRRILHFLLHCHTDPRQALISFLPLAHKSISLFLSPNERGHGSLYTAISIAASDRRAGSLFEDPDTILSSVVLMLGSDGALPQSKAYAQCELFLRKAPFSHYWTLNRRNFMSIFCFVSGLFEGDYANS* 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4583506 4596488 - Vvi19g351 Vvi19g351 781850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g351 820 ProSiteProfiles Protein kinase domain profile. 349 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g351 820 ProSiteProfiles PAN/Apple domain profile. 181 262 IPR003609 -
Vvi19g351 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 17 58 IPR036426 -
Vvi19g351 820 PANTHER - 1 644 - -
Vvi19g351 820 Gene3D Hepatocyte Growth Factor 178 261 - -
Vvi19g351 820 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 1 644 - -
Vvi19g351 820 SMART serkin_6 349 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g351 820 Pfam Protein tyrosine and serine/threonine kinase 352 616 IPR001245 GO:0004672|GO:0006468
Vvi19g351 820 CDD STKc_IRAK 355 620 - -
Vvi19g351 820 CDD PAN_AP_plant 177 262 - -
Vvi19g351 820 SMART ntp_6 182 261 IPR003609 -
Vvi19g351 820 Gene3D Phosphorylase Kinase; domain 1 307 424 - -
Vvi19g351 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Vvi19g351 820 SUPERFAMILY Protein kinase-like (PK-like) 331 620 IPR011009 -
Vvi19g351 820 Pfam S-locus glycoprotein domain 51 160 IPR000858 GO:0048544
Vvi19g351 820 Gene3D Transferase(Phosphotransferase) domain 1 425 626 - -
Vvi19g351 820 Pfam PAN-like domain 181 247 IPR003609 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76437 PF07714 PK_Tyr_Ser-Thr 1.90E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g351 - - vvi:109121490 1258.05