Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g359 ATGTGTTCGGGACTACCCCACTGGATCTTCAAATCAGTGACAGGTTTGTATAGTACTCTCCTGGACAGGCAGAACTCCTGGTTTAATCAAAGTAATCGAACTATGAACTGCAAGGGCAATCAATACTTGGGGATATGGTACAAGAAAGTGACTCCTAGGACAGTGGTATGGGTTGCCAACAGAGAACTCCCAGTCACTGATTCATCCGGAGTTTTAAAGGTCACCGACCAGGGAAGTCTTGTGATTCTTAATGGGTCCAATGGACTCATCTGGTCTTCTAATTCATCGCGGTCGGCAAGGAATCCAACTGCCCAACTTTTGGATTCTGGGAATCTTGTCATAAAAAGTGGAAATGATAGTGATCCAGATAATTTCCTATGGCAGAGCTTTGATTACCCAGGCGATACTCTTTTACCAGGCATGAAGCATGGAAGGAACACGGTGACAGGCCTGGATCGGTACCTATCATCATGGAAGAGCAACGACGACCCTTCTAAAGGTGATTTTACATATGGGCTTGATCCTAGTGGATGTCCACAACTATTTCTGAGGAGCGGCTCAACTGTGATTTTCCGGTCTGGGCCATGGAATGGTATTCGATTTAATGGGTTTCCTGAATTGAGGCCAAACCCAGTTTTTAATTATTCTTTTGTTTTCAATGAGAAGGAGATGTACTTTACCTATAAGCTTGTTAATAGCTCAGTTCTTTCCAGGCTGGTGTTAAATCCTAATGGAAACGTACAGCGTTTGATATGGATTGGTCGAACCAAGAGTTGGAATGTCTACTCAACCGCATATAAGGATGACTGTGACAGCTACGCATTATGCGGAGCGTACAGCACCTGTAACATACACCGATCTCCAAGATGTGGATGTATGAAAGGATTTGTACCAAAGTTCCCATACCAATGGGACACGATGGATTGGTCAAATGGGTGTGTACGAAAAACTTCACTGGATTGTCAGAAAGGTGATGGGTTTGTAAAGTGCTCTGGTGTCAAACTTCCAGACACTAGAAACTCCTGGTTTAATGAAAGCATGAACCTCAAGGAATGTGCATCCCTGTGCTTGAGGAACTGCTCTTGCTCTGCTTATACAAATTCAGATATCAAAGGAGGAGGAAGTGGATGCTTGCTCTGGTTTGGTGATTTGATTGATGTCAAGGAGTTCACTGAAAATGGGCAAGATTTCTACATAAGGATGGCTGCATCAGAATTAGATGCCATTTCAAAAGTGACGAAGAGAAGGTGGGTCATTGTCAGCACTGTGTCAATCGCGGGAATGATTCTCTTAAGCCTAGTTGTGACCTTGTATCTTCTGAAGAAGAGGCTAAAGAGAAAAGGGACAACAGAACTCAATAATGAAGGAGCTGAAACCAATGAAAGACAAGAGGATCTAGAGTTACCATTATTTGATTTGGATACAATTTTGAATGCTACCCATAACTTTTCAAGAAACAATAAGCTTGGAGAGGGTGGTTTTGGACCTGTCTACAAGGGTATGTTGCAAGATGGAAAAGAGATAGCTGTGAAGAGGCTGTCAAAGGAATCTAATCAAGGACTTGATGAGTTTAAAAATGAAGTTATATACATTTCCAAACTTCAGCACCGAAATCTTGTGAAGCTTCTAGGATGCTGCATTCATGGGGAAGAAAAGATGTTGATCTACGAATACATGCCCAACAAAAGCTTGAATTTCTTCATTTTTGATGGAATACAAAGCATGGTACTAGATTGGCCTAAGCGCTTTGTCATTATCAATGGTATTGCTCGTGGGCTTCTTTATCTTCATCAGGACTCAAGGCTCAGAATAATCCACAGGGATCTTAAAGCAGATAATGTTTTACTTGATAATGAGATGAACCCACGAATTTCAGACTTTGGCATGGCTAGAAGTTTTGGAGGAAATGAAACTCAAGCAAGAACAAAACGAGTAGTTGGAACATATGGTTACATGTCTCCAGAATATGCCATTGATGGAGTGTACTCAGTAAAATCAGATGTTTTTAGCTTTGGGGTTTTGCTGCTAGAGATTATTAGTGGGAAGAGAAACAGAGGATTTAACCACCCAGACCATGACCTTAATCTTCTTGGGCATGCATGGACACTCTATATGGAACGTACACCTTTGGAACTGATTGATGCATCTGTGGGTGACACGTACAATCAATCTGAAGTGCTACGTGCACTCAATGTGGGACTATTATGTGTGCAACGTCATCCAGATGATCGACCAAACATGTCTTCTGTGGTTCTGATGTTGAGTAGTGAGGGTGCATTACGTCAACCTAAAGAGCCTGGTTTTTTCACTGAAAGGAATATGCTGGAAGCAGATTCTTTACAATGCAAGCATGCAGATGTCTTCATCAGAATTAGATGCTTTTCAAGCACAAATAGCAGCTCCAAGAAGAAACCAAAGCAGATCATTTTCATCTCTATATCAATTACCAGAATAATTCATGTAAGCCTATTCATGACCTTGTACATGCTGAAGAAGAGGGAGAAGCAGCTAAAGAGAAAAGGTAACTATTTCAACTACTTTTGGTCGCTTCTCTCAACCATACTGCTTCTCTTCCAACAACAGACTCATCTAAGATGTCATCAGGTGATCAATCTCTTCTGGTGCTTTTTATATATAATGAAGATTATTCATAGATATAAGTTCAATAATAGAAGTCGACCTTATAATGAAAGCTATTCTTTTAAAAAAATACTAATCACTTGCATGTTGTAG 2733 40.83 MCSGLPHWIFKSVTGLYSTLLDRQNSWFNQSNRTMNCKGNQYLGIWYKKVTPRTVVWVANRELPVTDSSGVLKVTDQGSLVILNGSNGLIWSSNSSRSARNPTAQLLDSGNLVIKSGNDSDPDNFLWQSFDYPGDTLLPGMKHGRNTVTGLDRYLSSWKSNDDPSKGDFTYGLDPSGCPQLFLRSGSTVIFRSGPWNGIRFNGFPELRPNPVFNYSFVFNEKEMYFTYKLVNSSVLSRLVLNPNGNVQRLIWIGRTKSWNVYSTAYKDDCDSYALCGAYSTCNIHRSPRCGCMKGFVPKFPYQWDTMDWSNGCVRKTSLDCQKGDGFVKCSGVKLPDTRNSWFNESMNLKECASLCLRNCSCSAYTNSDIKGGGSGCLLWFGDLIDVKEFTENGQDFYIRMAASELDAISKVTKRRWVIVSTVSIAGMILLSLVVTLYLLKKRLKRKGTTELNNEGAETNERQEDLELPLFDLDTILNATHNFSRNNKLGEGGFGPVYKGMLQDGKEIAVKRLSKESNQGLDEFKNEVIYISKLQHRNLVKLLGCCIHGEEKMLIYEYMPNKSLNFFIFDGIQSMVLDWPKRFVIINGIARGLLYLHQDSRLRIIHRDLKADNVLLDNEMNPRISDFGMARSFGGNETQARTKRVVGTYGYMSPEYAIDGVYSVKSDVFSFGVLLLEIISGKRNRGFNHPDHDLNLLGHAWTLYMERTPLELIDASVGDTYNQSEVLRALNVGLLCVQRHPDDRPNMSSVVLMLSSEGALRQPKEPGFFTERNMLEADSLQCKHADVFIRIRCFSSTNSSSKKKPKQIIFISISITRIIHVSLFMTLYMLKKREKQLKRKGNYFNYFWSLLSTILLLFQQQTHLRCHQVINLFWCFLYIMKIIHRYKFNNRSRPYNESYSFKKILITCML* 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4668720 4693768 - Vvi19g359 Vvi19g359 781858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g359 910 Gene3D Phosphorylase Kinase; domain 1 457 558 - -
Vvi19g359 910 Pfam PAN-like domain 321 387 IPR003609 -
Vvi19g359 910 Pfam D-mannose binding lectin 54 159 IPR001480 -
Vvi19g359 910 Gene3D Transferase(Phosphotransferase) domain 1 559 765 - -
Vvi19g359 910 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Vvi19g359 910 ProSiteProfiles Bulb-type lectin domain profile. 11 127 IPR001480 -
Vvi19g359 910 Gene3D Hepatocyte Growth Factor 318 401 - -
Vvi19g359 910 Pfam S-locus glycoprotein domain 191 300 IPR000858 GO:0048544
Vvi19g359 910 SUPERFAMILY alpha-D-mannose-specific plant lectins 55 164 IPR036426 -
Vvi19g359 910 PIRSF SRK 772 846 IPR024171 GO:0004674
Vvi19g359 910 PIRSF SRK 16 802 IPR024171 GO:0004674
Vvi19g359 910 SMART blect_4 11 133 IPR001480 -
Vvi19g359 910 Gene3D - 18 130 IPR036426 -
Vvi19g359 910 SMART serkin_6 483 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g359 910 ProSiteProfiles PAN/Apple domain profile. 321 402 IPR003609 -
Vvi19g359 910 PANTHER - 39 780 - -
Vvi19g359 910 ProSiteProfiles Protein kinase domain profile. 483 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g359 910 CDD B_lectin 40 133 IPR001480 -
Vvi19g359 910 CDD STKc_IRAK 489 754 - -
Vvi19g359 910 SMART ntp_6 322 401 IPR003609 -
Vvi19g359 910 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 39 780 - -
Vvi19g359 910 CDD PAN_AP_plant 317 402 - -
Vvi19g359 910 Pfam Protein tyrosine and serine/threonine kinase 486 751 IPR001245 GO:0004672|GO:0006468
Vvi19g359 910 SUPERFAMILY Protein kinase-like (PK-like) 466 756 IPR011009 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76441 PF07714 PK_Tyr_Ser-Thr 1.70E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g359 - - vvi:100267579 1507.27