Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g36 ATGCCCTGCACAATCAGGTCACATGTACAGATTAAAGAGATACTGAATCTCCAATTTTTTTCTTCTCATCTTACTGACACTACACAAATATCTTATCAACTAAACTTTTCCAGATACGAGCATGTTTATCATAACATCCAGCCACATGTGACAAGGACTCTGCTCCATGCTTTCTTGGACCCAATAAAAGCATTGCCTCAACATTATGGGGCAATTCAGGGGTTGGCAGCATTTGGACCCAGTGTGGTATCATTTGTTCTCTTGCTTTTAGCATCAAAGGAGGAATGTTACAACTGGAAAAGTGGCTGTTTTTTATTTTTTAAAAACATCAAATTACAGGCCACTGTCATCTTATCCAGATATCAATACTACTCAACCCCAATTCGAGCATTGGCAGGAGTTGCAGAGAGCTCAACAATGGCGATAACCTTTGCTTCATCATCGGTGATGCTCCCGTCTCCGTCTCCGTCTCCGAAACCCTCTTTTGGGTCTCTGAAGAAAACGACGCCGTTTCTTGGGTTCTCAATCTCCGCAGCAAACCCGAAGCCCTCCTTTCCTAGGCAGAGTTTTCGTGTGAATTGCCAGGACAAGGCAGCAGTTGTGCCCTTGGACCAGCGCTGGATGTTCGAACAGTCCGAAGTTTCTGGCCCTGACATTTGGAATAAAACATGGTATCCCAAAGCTGCTGATCATATAAACACAGAAAAAACATGGTATATTGTTGATGCAACTGATAAGATACTCGGAAGACTGGCATCAACAATAGCCATTTATATTCGTGGGAAGAATCTGGCAACCTACACTCCTAGTGTGGACATGGGATCATTTGTAATTGTGGTGAATGCAGAAAAAGTTGCAGTATCTGGCAAAAAGAGGACCCAGAAGCTCTACAGGAGGCATTCAGGAAGACCAGGTGGTATGAAAGTGGAGACATTTGATCAGTTACAACAGAGAATTCCAGAAAGAATTGTTGAACATGCTGTTCGGGGTATGCTTCCTAAAGGCAGGCTTGGCCGTGCACTTTTCAACCATCTTAAGGTATACAAGGGTCCACACCATCCACACGAGGCTCAGAAGCCCATTGACCTGCCCATCAGGGACAAAAGGATACAAAAGGAGAGGTAG 1125 44.18 MPCTIRSHVQIKEILNLQFFSSHLTDTTQISYQLNFSRYEHVYHNIQPHVTRTLLHAFLDPIKALPQHYGAIQGLAAFGPSVVSFVLLLLASKEECYNWKSGCFLFFKNIKLQATVILSRYQYYSTPIRALAGVAESSTMAITFASSSVMLPSPSPSPKPSFGSLKKTTPFLGFSISAANPKPSFPRQSFRVNCQDKAAVVPLDQRWMFEQSEVSGPDIWNKTWYPKAADHINTEKTWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGSFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPHHPHEAQKPIDLPIRDKRIQKER* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 419929 427216 + Vvi19g36 Vvi19g36 781535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g36 374 PANTHER RIBOSOMAL PROTEIN L13 189 374 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi19g36 374 ProSitePatterns Ribosomal protein L13 signature. 328 350 IPR023563 GO:0003735|GO:0005840|GO:0006412
Vvi19g36 374 Gene3D - 6 98 IPR046344 GO:0006367
Vvi19g36 374 Pfam TAF6 C-terminal HEAT repeat domain 37 88 IPR011442 GO:0006367
Vvi19g36 374 Pfam Ribosomal protein L13 236 354 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi19g36 374 MobiDBLite consensus disorder prediction 350 374 - -
Vvi19g36 374 CDD Ribosomal_L13 238 351 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi19g36 374 PANTHER 50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC-LIKE 189 374 - -
Vvi19g36 374 TIGRFAM rplM_bact: ribosomal protein uL13 233 363 IPR005823 GO:0003735|GO:0005840|GO:0006412
Vvi19g36 374 Gene3D Ribosomal protein L13 227 370 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vvi19g36 374 Hamap 50S ribosomal protein L13 [rplM]. 238 362 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi19g36 374 SUPERFAMILY Ribosomal protein L13 233 365 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g36 K02871 RP-L13, MRPL13, rplM; large subunit ribosomal protein L13 - vvi:100248623 456.447
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g36 Blo03g00706 . . . . . . . . . Cma01g01268 . Car01g01085 Car09g00596 . Cpe06g00526 Cpe02g00654 Bhi09g03565 . . . Hepe01g1465 . . Cla11g01689 Cam11g1753 Cec11g1777 Cco11g1779 Clacu11g1913 Cmu11g1724 Cre11g2134 Cone6ag0209 Cone9ag0237 . . Lsi04g01980 Csa04g02257 . Cme07g00501 . . . . Bpe11g00439 . . Bma14g00274 . Cmo01g01322 Cmo09g00657 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006395 1 1 1 2 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 36