Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g366 ATGGCAGACTGGTCAAAGGGATGCGTTCGAAGTACTCCGCTGGATTGTCAAAAGGGTGATGGATTTGTAAAGTACTCTGGTGTGAAACTGCCAGACACGCGGAACTCCTGGTTTGATGAAAGCATGAACCTTAAGGAATGTGCTTCCTTGTGCTTGAGGAACTGCTCTTGCACTGCTTATGCAAATTCAGATATCAGAGGAGGAGGAAGTGGATGCTTGCTCTGGTTTGATGACTTGATTGACATCAGAGACTTCACTCAAAATGGGCAAGAGTTTTATGCAAGGATGGCTGCATCAGAATCAGAAGCTTCTTCAAGCATAAATAGTAGCTCCAAGAAGAAGAAAAAGCAGGTCATTGTCATCTCTATATCAATTACAGGAATAGTTTTTTTAAGTCCAGTCCTGATCTTGTATGTGCTCAAGAAGAGGAAGAAGCAGCTAAAGAAAAAAGATCACATGCGAAGCAGGGTACTAGATTGGCCTAAGCGCTTCCTCATTATCAATGGGATTGCTCGAGGCCTTCTTTATCTTCATCAAGATTCTAGACTCAGGATAATCCATAGAGATCTCAAAGCAGAAAACATTTTACTAGATAATGAAATGAGCCCCAAAATTTCAGACTTCGGAATAGCAAGAAGTTTTGGAGGAAATGAAATTGAAGCAAACACAACAAGAGTGGCTGGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCCACAAAATCCGATGTTTTTAGCTTTGGTGTTTTGTTGCTAAAGATTGTAAGTGGGAAGAGAAACAGAGGATTTAGCCACCCAGGCCATGACCTTAATCTTCTTGGGCATGCATGGACACTCTATATAGAAGGTGGGTCTTTAGAATTTATTGATACATCAAAAGTGAACACCTGCAATCTATTTGAAGTGCTACGTTCAATCAACGTGGGCCTATTATGCATACAACGTTTCCCGGATGATCGACCAAGCATGCACTCTGTGATTTTGATGTTGGGTAGTGAGGGGGCACTACCTCGGCCCAAAGAGCCTTGTTTCTTCACTGATAGGAATATGATGGATGCAAATTCTTTCTCTGGTATTCAACCCACCATCACATTGTTGGAAGCTCGATAG 1125 41.69 MADWSKGCVRSTPLDCQKGDGFVKYSGVKLPDTRNSWFDESMNLKECASLCLRNCSCTAYANSDIRGGGSGCLLWFDDLIDIRDFTQNGQEFYARMAASESEASSSINSSSKKKKKQVIVISISITGIVFLSPVLILYVLKKRKKQLKKKDHMRSRVLDWPKRFLIINGIARGLLYLHQDSRLRIIHRDLKAENILLDNEMSPKISDFGIARSFGGNEIEANTTRVAGTLGYMSPEYASEGLYSTKSDVFSFGVLLLKIVSGKRNRGFSHPGHDLNLLGHAWTLYIEGGSLEFIDTSKVNTCNLFEVLRSINVGLLCIQRFPDDRPSMHSVILMLGSEGALPRPKEPCFFTDRNMMDANSFSGIQPTITLLEAR* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4729361 4732605 - Vvi19g366 Vvi19g366 781865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g366 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Vvi19g366 374 Gene3D Transferase(Phosphotransferase) domain 1 143 340 - -
Vvi19g366 374 SMART serkin_6 93 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g366 374 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 148 - -
Vvi19g366 374 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 154 354 - -
Vvi19g366 374 Gene3D Hepatocyte Growth Factor 13 97 - -
Vvi19g366 374 SMART ntp_6 17 96 IPR003609 -
Vvi19g366 374 SUPERFAMILY Protein kinase-like (PK-like) 151 335 IPR011009 -
Vvi19g366 374 ProSiteProfiles PAN/Apple domain profile. 16 97 IPR003609 -
Vvi19g366 374 Pfam PAN-like domain 16 82 IPR003609 -
Vvi19g366 374 Pfam Protein kinase domain 162 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g366 374 CDD PAN_AP_plant 12 95 - -
Vvi19g366 374 ProSiteProfiles Protein kinase domain profile. 1 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g366 374 PANTHER GLYCOPROTEIN S6, PUTATIVE-RELATED 154 354 - -
Vvi19g366 374 PANTHER GLYCOPROTEIN S6, PUTATIVE-RELATED 2 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g366 - - - vvi:100243545 454.136
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015684 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 10
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76446 PF00069 Pkinase 8.20E-26 CL0016 Vvi PK