Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g369 ATGGATCATAAATCAAAAGAAGGTGAAAACAATGAAGGCCAAGAGCATCTAGATTTACCATTATTTAACTTGGCTACATTATTGAATGCCACCAATAACTTTTCTGAGGAAAATAAGCTTGGAGAGGGTGGTTTTGGGCCTGTCTATAAGGGAATATTGCAAGAAGGACAAGAAATAGCAGTAAAGATGATGTCAAAAACTTCTAGACAAGGATTAAAAGAGTTCAAAAATGAAGTTGAATCCATTACAAAACTTCAGCACCGAAATCTTGTAAAGCTTCTTGGATGCTGCATTCATGGCAGAGAAAGATTGTTGATTTATGAATACATGCCCAACAAAAGCTTGGACTTGTACATTTTTGATCACATGCGAAGCAGGGTACTAGATTGGCCTAAACGCTTCCTCATTATCAATGGGATTGCTCGAGGCCTTCTTTATCTTCATCAAGATTCTAGACTCAGGATAATCCATAGAGATCTCAAAGCAGAAAACATTTTACTAGATAATGAAATGACCCCCAAAATTTCAGACTTCGGGATAGCAAGAAGTTTTGGAGGAAATGAAACTGAAGCAAACACAACAAGAGTGGTTGGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCCACAAAATCCGATGTTTTTAGTTTTGGTGTTTTGTTGCTAGAGATTGTAAGTGGGAAGAGAAACAGAAGATTTAGCCACCCAGACCATGACCTTAATCTTCTTGGGCATGCATGGACACTCTATATAGAAGGTGGGTCTTTAGAATTTATTGATACATCAATAGTGAACACCTGCAATCTAATTGAAGTGCTACGTTCAATCAATGTGGGCCTATTATGCGTACAACGTTTCCCGGATGATCGACCAAGCATGCATTCTGTGATTCTGATGTTGGGTAGTGAGGGTGCACCACCTCGGCCCAAAGAGCCTTGTTTCTTCACTGATAGGAATATGATGGAAGCAAATTCTTCCTCTGGTATTCAACCCACCATCACGTTGTTGGAAGCTCGATAG 1035 39.23 MDHKSKEGENNEGQEHLDLPLFNLATLLNATNNFSEENKLGEGGFGPVYKGILQEGQEIAVKMMSKTSRQGLKEFKNEVESITKLQHRNLVKLLGCCIHGRERLLIYEYMPNKSLDLYIFDHMRSRVLDWPKRFLIINGIARGLLYLHQDSRLRIIHRDLKAENILLDNEMTPKISDFGIARSFGGNETEANTTRVVGTLGYMSPEYASEGLYSTKSDVFSFGVLLLEIVSGKRNRRFSHPDHDLNLLGHAWTLYIEGGSLEFIDTSIVNTCNLIEVLRSINVGLLCVQRFPDDRPSMHSVILMLGSEGAPPRPKEPCFFTDRNMMEANSSSGIQPTITLLEAR* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4797273 4799404 - Vvi19g369 Vvi19g369 781868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g369 344 CDD STKc_IRAK 40 305 - -
Vvi19g369 344 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g369 344 SUPERFAMILY Protein kinase-like (PK-like) 18 315 IPR011009 -
Vvi19g369 344 Pfam Protein tyrosine and serine/threonine kinase 37 234 IPR001245 GO:0004672|GO:0006468
Vvi19g369 344 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 331 - -
Vvi19g369 344 Gene3D Transferase(Phosphotransferase) domain 1 110 310 - -
Vvi19g369 344 Gene3D Phosphorylase Kinase; domain 1 2 109 - -
Vvi19g369 344 SMART serkin_6 34 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g369 344 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-1 11 331 - -
Vvi19g369 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76449 PF07714 PK_Tyr_Ser-Thr 6.10E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g369 - - vvi:100267473 675.626