Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g370 ATGGATGCTCTTGCAACAGTTGTGTTCATCTTCTCCTATGTATTCTCCCTCTTAAGAATCTCCACTGCAGTAGACACCATAAATGTAAATCAACACATTAGAGATGGCGAGACCATCACTTCAGCGGGTGGGACCTTTCAATTGGGTTTCTTCAGTCCAGGTGATTCCAAGAATCGATACTTGGGGATATGGTACAAGAAAGTGGCTCCTCAGACGGTGGTATGGGTTGCCAATAGAGAAAGTCCACTAACTGATTCATCAGGTGTTTTAAAGGTCACTCAGCAGGGAACTCTTGTTGTGGTCAGCGGTACTAATGGAATTCTTTGGAATTCTAATTCATCACGTTCTGCGCAGGATCCAAACGCTCAGCTTTTGGAATCTGGAAATCTTGTTATGAGAAATGGCAATGATAGTGACCCGGAAAACTTCCTATGGCAGAGTTTTGATTATCCATGCGATACTCTTCTACCAGGCATGAAGTTTGGATGGAACAGAGTAACAGGCCTGGATCGGTACCTGTCATCGTGGAAGAGTGCGGATGACCCTTCTAAAGGTAATTTTACTTATGGGATTGATCTAAGTGGATTTCCACAACCATTTTTGAGGAATGGTTTAACTGTAAAGTTTCGTGCTGGACCATGGAATGGTGTTCGATTTGGTGGAATACCACAATTAACAAACAACTCACTTTTTACATTTGATTATGTTTCTAATGAAAAGGAGATATATTTTATTTATTATCTTGTTAACAGCTCTGTTTTTGTGAGGCGTGTGTTAACTCCTGATGGTTATTCACGAAGGTTCACATGGACTGATAAAAAAAATGAATGGACTCTTTACTCAACTGCACAGAGGGATGACTGTGACAATTATGCAATATGTGGAGTATATGGAATCTGTAAGATTGATGAATCTCCAAAATGTGAGTGTATGAAGGGATTTAGGCCAAAGTTCCAAAGCAATTGGGACATGGCAGACTGGTCAAAGGGATGCGTTCGAAGTACTCCGCTGGATTGTCAAAAGGGTGATGGATTTGTAAAGTACTCTGGTGTGAAACTGCCAGACACGCGGAACTCCTGGTTTGATGAAAGCATGAACCTTAAGGAATGTGCTTCCTTGTGCTTGAGGAACTGCTCTTGCACTGCTTATGCAAATTCAGATATCAGAGGAGGAGGAAGTGGATGCTTGCTCTGGTTTGATGACTTGATTGACATCAGAGACTTCACTCAAAATGGGCAAGAGTTTTATGCAAGGATGGCTGCATCAGAATCAGAAGCTTCTTCATGCATAAATAGTAGCTCCAAGAAGAAGAAAAAGCAGGTGATTGTCATCTCTATATCAATTACAGGAATAGTTTTTTTAAGTCTCATCCTGATCTTGTATGTGCTCAAGAAGAGGAAGAAGCAGCTAAAGAAAAAAGGTGAGTAA 1428 41.04 MDALATVVFIFSYVFSLLRISTAVDTINVNQHIRDGETITSAGGTFQLGFFSPGDSKNRYLGIWYKKVAPQTVVWVANRESPLTDSSGVLKVTQQGTLVVVSGTNGILWNSNSSRSAQDPNAQLLESGNLVMRNGNDSDPENFLWQSFDYPCDTLLPGMKFGWNRVTGLDRYLSSWKSADDPSKGNFTYGIDLSGFPQPFLRNGLTVKFRAGPWNGVRFGGIPQLTNNSLFTFDYVSNEKEIYFIYYLVNSSVFVRRVLTPDGYSRRFTWTDKKNEWTLYSTAQRDDCDNYAICGVYGICKIDESPKCECMKGFRPKFQSNWDMADWSKGCVRSTPLDCQKGDGFVKYSGVKLPDTRNSWFDESMNLKECASLCLRNCSCTAYANSDIRGGGSGCLLWFDDLIDIRDFTQNGQEFYARMAASESEASSCINSSSKKKKKQVIVISISITGIVFLSLILILYVLKKRKKQLKKKGE* 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4799620 4801550 - Vvi19g370 Vvi19g370 781869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g370 475 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Vvi19g370 475 SMART blect_4 30 151 IPR001480 -
Vvi19g370 475 Gene3D Hepatocyte Growth Factor 336 420 - -
Vvi19g370 475 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Vvi19g370 475 PANTHER - 12 438 - -
Vvi19g370 475 PANTHER - 12 438 - -
Vvi19g370 475 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Vvi19g370 475 Gene3D - 19 148 IPR036426 -
Vvi19g370 475 Pfam D-mannose binding lectin 72 177 IPR001480 -
Vvi19g370 475 CDD B_lectin 30 151 IPR001480 -
Vvi19g370 475 SMART ntp_6 340 419 IPR003609 -
Vvi19g370 475 PIRSF SLG 3 434 IPR035446 -
Vvi19g370 475 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Vvi19g370 475 CDD PAN_AP_plant 335 420 - -
Vvi19g370 475 Pfam PAN-like domain 339 405 IPR003609 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g370 - - - vvi:100267473 915.605
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g370 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01265 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000044 0 24 5 3 2 9 7 8 11 14 6 9 9 16 11 9 8 16 6 8 18 10 10 8 9 16 4 9 10 13 288