Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g373 ATGGATTCTCTTACAACAGTTGCAGTTATCTTCTCTTATGTATTATCCCTCTTAAGAATCTCCGTGGCAGTAGACACCATAATTGTAAATCAAAACATTACAGATGGTGAGACCATCACTTCAGCTGGTGGGAGCTTTGAACTGGGTTTCTTCAGTCCAGGTAATTCCAAGAACCGATACTTGGGGATATGGTACAAGAAAGTGGCTACTGGGACAGTGGTATGGGTTGCCAATAGAGAAAGTCCACTAACTGATTCATCGGGAGTTTTAAAGGTCACTGAGCAGGGAATTCTTGTTCTGGTCAACGATACTAATGGAATTCTTTGGAATTCTAGTTCATCACGTTCTGCACAGGATCCAAACGCTCAGCTTTTGGAATCTGGAAATCTTGTTATGAGAAATGGCAATGATAGTGACCCGGAAAACTTCCTATGGCAGAGTTTTGATTATCCATGCGATACTCTTCTACCAGGCATGAAGTTTGGATGGAACAGAGTAACAGGCCTGGATCGGTACCTGTCATCTTGGAAGAGTACGGATGACCCTTCTAAAGGTAATTTTACTTATGGGATTGATCTAAGTGGATTTCCACAACCATTTTTGAGGAATGGTTTAGCTGTAAAGTTTCGTGCTGGACCATGGAATGGTGTTCGATTTGGTGGAATACCACAATTAACAAACAACTCACTTTTTACGTCTGATTATGTTTCTAATGAAAAGGAGATATATTCTATTTATTATCTTGTTAACAGCTCTGTTTTTGTGAGGCGTGTGTTAACTCCTGATGGTTATTCACGAAGGTTCACATGGACTGATAAAAAAAATGAATGGACTCTTTACGCAACTGCACAGAGCGATGACTGTGACAATTATGCAATATGTGGAGTATATGGAATCTGTAAGATTGATGAATCTCCAAAATGTGAGTGCATGAAGGGATTTAGGCCAAAGTTCCAAAGCAATTGGGACATGGCAGACTGGTCAAATGGATGCATTCGAAGCACTCCGCTGGATTGTCAGAAGGGTGATGGATTTGTAAAGTACTCTGGTGTGAAACTGCCAGACACGCGGAACTCCTGGTTTAATGAAAGCATGAACCTTAAGGAATGTGCTTCCCTGTGCTTGAGGAACTGCTCTTGCACTGCTTATGCAAATTCGGACATCAGAGGAGGAGGAAGTGGATGCTTGCTCTGGTTTGGTGACTTGATTGATATCAGAGACTTCACTCACAATGGGCAAGAGTTTTATGTAAGGATGGCTGCATCAGAATTAGAAGCTTCTTCAAGCATAAAAAGCAGCTCCAAGAAGAAGAAAAAGCATGTCATTATCATCTCTATATCAACTACAGGAATAGTTCTTTTAAGTCTAGTCCTGACCTTGTATGTGCTCAAGAAAAGGAAGAAGCAACTAAAGAGAAAAGGATACATGGATCATAATTCAAGAGATGAAAATAATGAAGGCCAAGCGCATTTAGAGTTACCATTATTTGACTTGGATACATTATTGAATGCCACCAATAACTTTTCTAGTTACAATAAGCTTGGAGAGGGTGGTTTTGGACCTGTCTATAAGGGAATATTGCAAGAGGGACAAGAAATTGCAGTGAAGATGATGTCAAACACTTCTAGACAAGGATTAAAAGAGTTCAAAAATGAAGTTGAATCCATTGCAAAACTTCAACACCGAAATCTTGTAAAGCTTCTTGGATGCTGCATTCATGGCAGAGAAAGAATGTTGATCTACGAATACATGCCCAACAAAAGCTTGGACTTTTTCATTTTTGATCAAATGCAAAGCGTGGCACTAGATTGGTCTAAGCGCTTCCTCATTATCAATGGGATTGCTCGAGGTCTTCTTTATCTTCATCAAGATTCTAGACTCAGAATAATCCATAGAGACCTTAAAGCAGAAAACATTTTACTAGATAATGAAATGAGCCCCAAAATTTCAGACTTTGGAATAGCAAGATGTTTTGGAGGAAATGAAACTGAAGCAAACACAACAAGAGTGGCTGGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCCACAAAATCCGATGTTTTTAGCTTTGGTGTTTTAGTTCTAGAGATTGTAAGTGGGAAGAGAAATAGAGGATTTAACCACCCAGATCACGACCTTAATCTTCTTGGGCATGCGTGGACACTCTTTATGGAAGATAGGTCTTCAGAATTTATTGATGCATCAATGGGCAACTCTTGCATCCTATCTGAAGTGCTACGTTCAATCAATTTGGGTCTGCTATGTGTGCAACGTTTCCCAGATGATCGACCAAGCATGCATTCTGTGGCTCTGATGTTGGGTAGTGAGGGTGCACTACCTCAACCCAAAGAGCCTTGTTTCTTCATTGATAGGAATATGATGGAAGCAAATTCTCCCTCTGGTATTCAATCCACCATCACACTGTTGGAAGCTCGATAG 2457 40.17 MDSLTTVAVIFSYVLSLLRISVAVDTIIVNQNITDGETITSAGGSFELGFFSPGNSKNRYLGIWYKKVATGTVVWVANRESPLTDSSGVLKVTEQGILVLVNDTNGILWNSSSSRSAQDPNAQLLESGNLVMRNGNDSDPENFLWQSFDYPCDTLLPGMKFGWNRVTGLDRYLSSWKSTDDPSKGNFTYGIDLSGFPQPFLRNGLAVKFRAGPWNGVRFGGIPQLTNNSLFTSDYVSNEKEIYSIYYLVNSSVFVRRVLTPDGYSRRFTWTDKKNEWTLYATAQSDDCDNYAICGVYGICKIDESPKCECMKGFRPKFQSNWDMADWSNGCIRSTPLDCQKGDGFVKYSGVKLPDTRNSWFNESMNLKECASLCLRNCSCTAYANSDIRGGGSGCLLWFGDLIDIRDFTHNGQEFYVRMAASELEASSSIKSSSKKKKKHVIIISISTTGIVLLSLVLTLYVLKKRKKQLKRKGYMDHNSRDENNEGQAHLELPLFDLDTLLNATNNFSSYNKLGEGGFGPVYKGILQEGQEIAVKMMSNTSRQGLKEFKNEVESIAKLQHRNLVKLLGCCIHGRERMLIYEYMPNKSLDFFIFDQMQSVALDWSKRFLIINGIARGLLYLHQDSRLRIIHRDLKAENILLDNEMSPKISDFGIARCFGGNETEANTTRVAGTLGYMSPEYASEGLYSTKSDVFSFGVLVLEIVSGKRNRGFNHPDHDLNLLGHAWTLFMEDRSSEFIDASMGNSCILSEVLRSINLGLLCVQRFPDDRPSMHSVALMLGSEGALPQPKEPCFFIDRNMMEANSPSGIQSTITLLEAR* 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4851074 4855125 - Vvi19g373 Vvi19g373 781872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g373 818 CDD STKc_IRAK 514 779 - -
Vvi19g373 818 SMART blect_4 30 151 IPR001480 -
Vvi19g373 818 CDD PAN_AP_plant 335 420 - -
Vvi19g373 818 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 12 806 - -
Vvi19g373 818 SMART serkin_6 508 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g373 818 Pfam D-mannose binding lectin 72 177 IPR001480 -
Vvi19g373 818 Gene3D Phosphorylase Kinase; domain 1 469 583 - -
Vvi19g373 818 Gene3D - 19 148 IPR036426 -
Vvi19g373 818 Gene3D Transferase(Phosphotransferase) domain 1 584 785 - -
Vvi19g373 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Vvi19g373 818 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Vvi19g373 818 PIRSF SRK 1 817 IPR024171 GO:0004674
Vvi19g373 818 Gene3D Hepatocyte Growth Factor 336 419 - -
Vvi19g373 818 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Vvi19g373 818 Pfam PAN-like domain 339 405 IPR003609 -
Vvi19g373 818 SMART ntp_6 340 419 IPR003609 -
Vvi19g373 818 CDD B_lectin 33 151 IPR001480 -
Vvi19g373 818 ProSiteProfiles Protein kinase domain profile. 508 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g373 818 PANTHER - 12 806 - -
Vvi19g373 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Vvi19g373 818 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Vvi19g373 818 SUPERFAMILY Protein kinase-like (PK-like) 487 779 IPR011009 -
Vvi19g373 818 Pfam Protein tyrosine and serine/threonine kinase 511 709 IPR001245 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76451 PF07714 PK_Tyr_Ser-Thr 2.80E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g373 - - vvi:100260545 1620.14