Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g376 ATGGCATTAGACACCATAATTGTAAACCAACCCATTACAGATGGCGAGACCATCACTTCAGCTGGTGGGAGCTTTGAACTGGGTTTCTTCAATCCTGGTAATTCCAAGAACCGATACTTGGGGATATGGTACAAGAAAGCGTCTAAAAAGCCTGTAGTATGGGTTGCCAATAGAGAAAGTCCATTAACTGATTCATCCGGAGTTTTAAAGGTCACTCAGCCGGGAATTCTTGTTCTGGTGAATGGTACTAATGGAATTCTTTGGAATTCTACTTCATCACGTTCTGCACAGGATCCGAACGCTCAGCTTTTGGATTCTGGAAATCTTATTATGAGAAATGGCAATGATAGTGATCCAGAAAACTCCCTATGGCAGAGTTTTGATTACCCATGCGATACTCTTCTACCAGGCATGAAGTTTGGATGGAACAGAGTAACAGGCCTGGATCGGCACCTGTCATCGTGGAGGAGTGCAGATGACCCTTCTAAAGGTAATTTTACTTATGGGATTGATCTAAGTGGATTTCCACAACTACTTCTGAAGAATGGTTTAGCTGTAGCGTTTCGCCCTGGACCATGGAATGGTATTCGATTCAGTGGAATTCCTCAATTAACAATTAACCCAGTTTATAGTTATGAATTTGTTTCTAATGAAAAGGAGATATATTTTATGTATCATCTTGTTAACAGCTCTGTTGTTATGAGGAATGTGTTAACTCCTGATGGTTATTCACGAAGGTTCACATGGACTGATCAAAAAAATGAATGGTCTCTTTACTCAACAGCACAGAGGGATGACTGTGACACTTATGCAATATGTGGAGTAAATGGAATCTGTAAGATTAATGAATCTCCAAAATGTGAGTGTATGAAGGGATTTAGGCCAAAGATCCAAAGCAATTGGGACATGGCAGACTGGTCAAATGGATGCATTCGAAGCACTCGGCTGGATTGTCAGAAGGGTGATGGATTTGAAAAGTACTCTGGTGTGAAGCTGCCAGACACGCAGAGCTCCTGGTTTAACGAAAGCATGAACCTTAAGGAATGTGCTTCCCTGTGCTTGAGCAACTGCTCTTGCACTGCTTATGCAAATTCAGATATCAGAGGGGCAGGTAGTGGATGCTTGCTCTGGTTTGGTGGCTTGATTGACATCAGAGACTTCACTCAAAATGGGCAAGAGTTTTATGTAAGGATGGCTGCATCAGAATTAGAAGCTTCTTCAAGCATAAATAGCAGCTCCAAGAAGAAGAGAAAGCAGGTCATTGTCATCTCTATATCAATTATAGGAATAGTTCTTTTAAGTCTAGTCCTGAGCTTGTATGTGTTGAAGAAGAGGAAGAAGCAGCTAAAGAGAAAAGGTAAGTAA 1365 41.32 MALDTIIVNQPITDGETITSAGGSFELGFFNPGNSKNRYLGIWYKKASKKPVVWVANRESPLTDSSGVLKVTQPGILVLVNGTNGILWNSTSSRSAQDPNAQLLDSGNLIMRNGNDSDPENSLWQSFDYPCDTLLPGMKFGWNRVTGLDRHLSSWRSADDPSKGNFTYGIDLSGFPQLLLKNGLAVAFRPGPWNGIRFSGIPQLTINPVYSYEFVSNEKEIYFMYHLVNSSVVMRNVLTPDGYSRRFTWTDQKNEWSLYSTAQRDDCDTYAICGVNGICKINESPKCECMKGFRPKIQSNWDMADWSNGCIRSTRLDCQKGDGFEKYSGVKLPDTQSSWFNESMNLKECASLCLSNCSCTAYANSDIRGAGSGCLLWFGGLIDIRDFTQNGQEFYVRMAASELEASSSINSSSKKKRKQVIVISISIIGIVLLSLVLSLYVLKKRKKQLKRKGK* 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4868315 4870178 - Vvi19g376 Vvi19g376 781875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g376 454 CDD EGF_CA 265 296 - -
Vvi19g376 454 PANTHER - 2 416 - -
Vvi19g376 454 Pfam PAN-like domain 318 384 IPR003609 -
Vvi19g376 454 ProSiteProfiles Bulb-type lectin domain profile. 3 124 IPR001480 -
Vvi19g376 454 SUPERFAMILY alpha-D-mannose-specific plant lectins 52 161 IPR036426 -
Vvi19g376 454 SMART blect_4 9 130 IPR001480 -
Vvi19g376 454 Pfam D-mannose binding lectin 52 156 IPR001480 -
Vvi19g376 454 PIRSF SLG 4 414 IPR035446 -
Vvi19g376 454 Gene3D Hepatocyte Growth Factor 315 399 - -
Vvi19g376 454 CDD B_lectin 9 130 IPR001480 -
Vvi19g376 454 PANTHER - 2 416 - -
Vvi19g376 454 CDD PAN_AP_plant 314 399 - -
Vvi19g376 454 SMART ntp_6 319 398 IPR003609 -
Vvi19g376 454 Pfam S-locus glycoprotein domain 188 296 IPR000858 GO:0048544
Vvi19g376 454 ProSiteProfiles PAN/Apple domain profile. 318 399 IPR003609 -
Vvi19g376 454 Gene3D - 1 127 IPR036426 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g376 - - - vvi:100262263 841.647
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g376 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000044 0 24 5 3 2 9 7 8 11 14 6 9 9 16 11 9 8 16 6 8 18 10 10 8 9 16 4 9 10 13 288