Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g377 ATGGCTGCATCAGAATTAGAAGCTTCTTCAAGCATAAAAAGCAGCTCCAAGAAGAAGAAAAAGCATGTCATTATCATCTTTATATCAATTACAGGAATAGTTCTTTTAAGTCTAGTCCTGACCTTGTATGTGCTCAAGAAAAGGAAGAAGCAACTAAAGAGAAAAGGATACATGGATCATAATTCAAGAGATGAAAATAATGAAGGCCAAGCGCATTTAGAGTTACCATTATTTGACTTGGATACATTATTGAATGCCACCAATAACTTTTCTAGTTACAATAAGCTTGGAGAGGGTGGTTTTGGACCTGTCTATAAGGGAATATTGCAAGAGGGACAAGAAATTGCAGTGAAGATGATGTCAAAAACTTCTAGACAAGGATTAAAAGAGTTCAAAAATGAAGTTGAATCCATTGCAAAACTTCAACACCGAAATCTTGTAAAGCTTCTTGGATGCTGCATTCATGGCAGAGAAAGAATGCTAATTTATGAATACATGCCCAACAAAAGCTTGGACTTGTTCATTTTTGATCAAATGCAAAGCGTGGTACTAGATTGGCCTAAGCGCTTCCTCATTATCAATGGGATTGCTCGAGGCCTTCTTTATCTTCATCAAGATTCCAGACTCAGGATAATCCATAGAGATCTAAAAGCAGACAATATTTTGCTAGATGAGGAGATGACTCCAAAAATTTCAGATTTTGGTATGGCTAGAAGTTTTAGAGGAAACGAAACTGAAGCAAATACAAAAAGAGTGGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATTGATGGACTATACTCAACAAAGTCGGATGTTTTTAGCTTTGGTGTTTTGGTGCTAGAGATTGTGAGTGGGAAGAGAAACAGAGGATTTTCTCACCCAGACCACTCCTTTAACCTTCTTGGGCATGCATGGACATTGTACATGGAAGGCAGGTCTATGGAGCTGATTGATACATCAGTTGGGGACATGCATGATCTATCACAAGTGTTACGTTCGATCAATGTGGGACTCTTATGCGTACAGTGTAGTCTAGATGATAGACCAAGCATGTATTCGGTGGTTCTGATGTTGAGTAGCGACGGTGCACTTCCTCAGCCTAAAGAGCCTGGTTTTTTCACTGGAAGGGAAGCAAAGTCCTCCTCAGGCAATCAGGGGCCATCTTCAGGCAATGGGTTATTCATAATATATAAGTTCAATAATAGAAGTTGA 1221 38.82 MAASELEASSSIKSSSKKKKKHVIIIFISITGIVLLSLVLTLYVLKKRKKQLKRKGYMDHNSRDENNEGQAHLELPLFDLDTLLNATNNFSSYNKLGEGGFGPVYKGILQEGQEIAVKMMSKTSRQGLKEFKNEVESIAKLQHRNLVKLLGCCIHGRERMLIYEYMPNKSLDLFIFDQMQSVVLDWPKRFLIINGIARGLLYLHQDSRLRIIHRDLKADNILLDEEMTPKISDFGMARSFRGNETEANTKRVVGTYGYMSPEYAIDGLYSTKSDVFSFGVLVLEIVSGKRNRGFSHPDHSFNLLGHAWTLYMEGRSMELIDTSVGDMHDLSQVLRSINVGLLCVQCSLDDRPSMYSVVLMLSSDGALPQPKEPGFFTGREAKSSSGNQGPSSGNGLFIIYKFNNRS* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4899077 4903139 - Vvi19g377 Vvi19g377 781876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g377 406 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 385 - -
Vvi19g377 406 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-1 12 385 - -
Vvi19g377 406 SMART serkin_6 90 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g377 406 SUPERFAMILY Protein kinase-like (PK-like) 69 361 IPR011009 -
Vvi19g377 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Vvi19g377 406 ProSiteProfiles Protein kinase domain profile. 90 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g377 406 Gene3D Transferase(Phosphotransferase) domain 1 166 367 - -
Vvi19g377 406 CDD STKc_IRAK 96 361 - -
Vvi19g377 406 MobiDBLite consensus disorder prediction 372 392 - -
Vvi19g377 406 Gene3D Phosphorylase Kinase; domain 1 50 165 - -
Vvi19g377 406 Pfam Protein tyrosine and serine/threonine kinase 93 291 IPR001245 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76453 PF07714 PK_Tyr_Ser-Thr 1.10E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g377 - - vvi:100247061 721.465