Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g378 ATGGTTGTAAAGTCAATGGAGGACTTTTGTCCACTAACTGATTCATCAGGAGTTTTAAAGGTCACTCAGCAGGGAATTCTTGTTGTGGTCAACGGTACTAATGGAATTCTTTGGAATTCTAATTCATCACGTTCTGCACAGGATCCAAACGCTCAGCTTTTGGAATCTGGAAATCTTGTTATGAGAAATGGCAATGATAGTGACCCAGAAAACTTCCTATGGCAGAGTTCTGATTATCCAGGCGATACTCTTCTACCAGGCATGAAGTTTGGATGGAACAGAGTAACAGGCCTGGATCGGTACCTGTCATCATGGACGAGTGCTGATGACCCTTCTAAAGGTAATTTTACTTATGGGATTGATCTAAGTGGATTTCCACAACTATTATTGAGGAATGGTTTAGATGTAGAGTTTCGTGCTGGACCATGGAATGGAGTTGGATTTAGTGGACTACCTCAAGTAATAGAAAACTCAGTTACTAAATTTCATTTTGTTTCTAATGAAAAGGAGATATATTTTTCTTATTCTCTAGTTGACAGCTCTGTTATGATGAGGCTTGTGTTAACTCCTGATGGTTATTCACGAAGGTCTACATGGACTGATAAAAAAAATGAATGGACTCTTTACACAACTGCACAGAGGGATCACTGTGACAATTATGCATTATGTGGAGGATATGGAATCTGTAAGACTGCCCAATCTCAAACATGTGACTGTATGAAAGGATTTAGGCCAAAGTTCCAAATCAATTGGGACATGGCAGACTGGTCAAGTGGATGCGTTCGAAGCACTCCACTGGATTGTCAGACGGACGGATTTGTAAAGTTATCCGGTGTGAAACTGCCAGACACGCGGAACTCCTCGTTTAATGAAAGCATGAACCTTAAGGAATGTGCTTCCCTCTGCTTGAGGAACTGCTCTTGCACTGCTTATGGAAATTTAGATATCAGAGGAGGAGGAAGCGGATGCTTGCTCTGGTTTGGTGAATTGATTGACATCAGAGACTTTACTCAAAATGGGCAAGAGTTTTATGTAAGGATGGCTGCAGCAGACTTAGATGCTTTTTCAAGCACAAATAGCAGCTCCAAGAAGAAGCAAAAGCAGGTCATTGTCATCTCTATATCAATTACTGGAATAGTTCTTTTAAGTCTAGTCCTGACCTTGTATATGCTGAAGAAGAGGAAGAAGCAGCTAAAGAGAAAAAGATACATGGAACACAATTTAGGAGATGAAGGCCATGAGCATCTAGAGTTACCATTATTTGACTTGGATATATTATTGAATGCCACTAATAACTTTTCTAGAGATAATAAGCTTGGAGAGGGTGGTTTTGGACCTGTGTATAAGGGAATATTGCAAGAAGGACAAGAAATAGCAGTGAAGATGCTGTCAAAAACTTCTAGACAAGGATTAAAAGAGTTCAAAAATGAAGTTGAATCCATTGCAAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGATGTTGCATTCAAGGTCGAGAAAGGATGCTGATCTATGAATACATGCCCAACAAAAGCTTGGACCGTTTCATTTTTGATCAGATGCGAAGTGGAGTACTAGATTGGCCTAGGCGCTTCCTCATTATCAATGGGATTGCTCGAGGCTTGCTTTACCTTCATCAAGATTCTAGACTCAGGATAATCCATAGAGATCTCAAAGCAGAAAACATTTTACTAGATAATGAAATGACACCCAAAATTTCAGACTTTGGAATAGCAAGAATTTTTGGAGGAAATGAAACTGAAGCAAACACAACAAGAGTGGTTGGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCCACAAAATCCGATGTCTTTAGCTTTGGTGTTTTGGTTCTAGAGATTATAAGTGGGAAGAGAAATAGAGGATTTAACAACCCAGACCATGACCTTAATCTTCTTGGGCATGCATGGGCACTCTTTATAGAAGATAGGTCTTCAGAATTTATTGATGCATCAATGGGGAACACCTGCAATCTATCTGAAGTGCTACGCTCAATCAATTTGGGTCTATTATGTGTACAACGTTTCCCAGAGGATCGACCAAACATGCATTATGTGGTTTTGATGTTGAGTAGTGAGGGTGCATTACCTCAGCCCAAAGAGCCTTGTTTCTTCACTGATAAGAATATGATGGAAGCAAATTCTTCGTCTAGTATTCAACCCACCATCACGGTGTTGGAAGCTCGATAG 2232 39.83 MVVKSMEDFCPLTDSSGVLKVTQQGILVVVNGTNGILWNSNSSRSAQDPNAQLLESGNLVMRNGNDSDPENFLWQSSDYPGDTLLPGMKFGWNRVTGLDRYLSSWTSADDPSKGNFTYGIDLSGFPQLLLRNGLDVEFRAGPWNGVGFSGLPQVIENSVTKFHFVSNEKEIYFSYSLVDSSVMMRLVLTPDGYSRRSTWTDKKNEWTLYTTAQRDHCDNYALCGGYGICKTAQSQTCDCMKGFRPKFQINWDMADWSSGCVRSTPLDCQTDGFVKLSGVKLPDTRNSSFNESMNLKECASLCLRNCSCTAYGNLDIRGGGSGCLLWFGELIDIRDFTQNGQEFYVRMAAADLDAFSSTNSSSKKKQKQVIVISISITGIVLLSLVLTLYMLKKRKKQLKRKRYMEHNLGDEGHEHLELPLFDLDILLNATNNFSRDNKLGEGGFGPVYKGILQEGQEIAVKMLSKTSRQGLKEFKNEVESIAKLQHRNLVKLLGCCIQGRERMLIYEYMPNKSLDRFIFDQMRSGVLDWPRRFLIINGIARGLLYLHQDSRLRIIHRDLKAENILLDNEMTPKISDFGIARIFGGNETEANTTRVVGTLGYMSPEYASEGLYSTKSDVFSFGVLVLEIISGKRNRGFNNPDHDLNLLGHAWALFIEDRSSEFIDASMGNTCNLSEVLRSINLGLLCVQRFPEDRPNMHYVVLMLSSEGALPQPKEPCFFTDKNMMEANSSSSIQPTITVLEAR* 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4909145 4917818 - Vvi19g378 Vvi19g378 781877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g378 743 PANTHER - 10 733 - -
Vvi19g378 743 Gene3D Transferase(Phosphotransferase) domain 1 509 712 - -
Vvi19g378 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 554 566 IPR008271 GO:0004672|GO:0006468
Vvi19g378 743 Gene3D Phosphorylase Kinase; domain 1 392 508 - -
Vvi19g378 743 Gene3D Hepatocyte Growth Factor 266 347 - -
Vvi19g378 743 SMART serkin_6 433 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g378 743 ProSiteProfiles Protein kinase domain profile. 433 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g378 743 ProSiteProfiles Bulb-type lectin domain profile. 1 74 IPR001480 -
Vvi19g378 743 Pfam PAN-like domain 268 333 IPR003609 -
Vvi19g378 743 SMART ntp_6 268 347 IPR003609 -
Vvi19g378 743 ProSiteProfiles PAN/Apple domain profile. 268 348 IPR003609 -
Vvi19g378 743 Pfam D-mannose binding lectin 11 105 IPR001480 -
Vvi19g378 743 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 10 733 - -
Vvi19g378 743 SUPERFAMILY alpha-D-mannose-specific plant lectins 11 111 IPR036426 -
Vvi19g378 743 Pfam Protein tyrosine and serine/threonine kinase 436 700 IPR001245 GO:0004672|GO:0006468
Vvi19g378 743 Pfam S-locus glycoprotein domain 138 247 IPR000858 GO:0048544
Vvi19g378 743 SUPERFAMILY Protein kinase-like (PK-like) 418 733 IPR011009 -
Vvi19g378 743 CDD STKc_IRAK 439 704 - -
Vvi19g378 743 CDD PAN_AP_plant 264 348 - -
Vvi19g378 743 PIRSF SRK 7 743 IPR024171 GO:0004674
Vvi19g378 743 Gene3D - 2 78 IPR036426 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76454 PF07714 PK_Tyr_Ser-Thr 4.00E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g378 - - vvi:104877534 1444.48