Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g380 ATGAAGGAAGTCAATAGGTGCATTCAAGGTAAAGCACAGAGGTTCACATGGGCAGATGAAAAAAATGAATGGACTCTTTATTCAACTGCACAGAAGGATGACTGTGACAGTTATGCATTATGTGGTGCATATGGAATCTGTAAGATTGACCAATCTCCCAACTGTGAGTGTATGAAAGGATTTAGGCCAAAGTTCCAAAGCAAATGGGACACGGCAGATTGGTCAGATGGATGCGTTCGAAGTACTCCACTGGATTGTCGGAAGGGTGATGGATTTGTAAAGTACTCTGGTGTGAAACTTCCAGACACGCGGAACTCCTGGGTTCATGAAAGCATGAACCTCAAGGAATGTGCATGGATGTGCTTGAGGAACTGCTCTTGCTCTGCTTATGCAAATTCAGATATCAGAGGAGGAGGAAGTGGATGCTTGCTCTGGTTTGATGACTTGATTGACATCAGGGACTTCACTCAAAATGGGCAAGACTTCTATGTAAGGATGCCTGCATCAGAATTAGCTTCTTCAAGCCTAAATAGCAGCTCCAAGAAGAAGAAAAAGGAGGTCATGGTCGTCTCTATATCAATTACTATATCAATTATAGGAATAGTTCTTTTAAGTCTTATCCTGACCTTGTATGTGCTCAAGAAGAGGAAGAAGCAGCAAAAGAGAAAAGGATACATGGAACACAATTCAGACGGAGGTGAAAAAATTGAAGGCCAGGAGCATCTAGAGTTACCATTATTTGACTTGGATATATTATTGAATGCCACCAATTACTTTTCTAGTGACAATAAGCTTGGAGAGGGTGGTTTTGGACCTGTCTACAAGGGAATATTGCAAGGGGGACAAGAAATAGCAGTGAAGATGTTGTCAAAAACTTCTAGACAAGGAATAAAAGAGTTCAAAAATGAAGTTGAATCCATTACAAAACTTCAGCATCGAAATCTTGTAAAGCTTCTTGGATGCTGCATCTATGGTAGAGAAAGGATGTTGATCTATGAATACATGCCCAACAAAAGCTTGGACTTGTTCATTTTTGATCAAATGCGAAGCGGGACACTAGATTGGCTTAAGCGCTTCCTCATTATCAATGGGATCGCTCGAGGCCTTCTTTATCTTCATCAAGATTCCAGACTCAGGATAATCCATAGAGATCTCAAAGCAGAAAACATTTTACTAGACAATGAAATGAGCCCCAAAATTTCAGACTTTGGAATAGCAAGAAGTTTTGGAGGAAATGAAACTGAAGCAAACACAACAAGAGTGGCTGGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCTACAAAATCCGATGTTTTTAGCTTTGGTGTTTTGGTACTAGAGATTGTAAGTGGGAAGAGAAATAGAGGATTTAACCACCCAGACCACGACCTTAATCTTCTTGGGCATGCATGGACACTCTTTATAGAAGATCGGTCTTCCGAATTTATTGATGCATCAATGGGGAACATTTGCAATCTATCTGAAGTGCTGCGTTCAATCAATTTGGGTCTATTATGTGTGCAACGTTTCCCAGAGGATCGACCAAGCATGCATTATGTGGTTCTGATGTTGGGTGGTGAGGGTGCACTACCTCAGCCTAAAGAGCCTTGTTTCTTCACTGATAAGAATATGATGGAAGCAAATTCTTCCTCTGGTACTCAACCTACCATCACACTGTTGGAAGCTCGATAG 1710 40.88 MKEVNRCIQGKAQRFTWADEKNEWTLYSTAQKDDCDSYALCGAYGICKIDQSPNCECMKGFRPKFQSKWDTADWSDGCVRSTPLDCRKGDGFVKYSGVKLPDTRNSWVHESMNLKECAWMCLRNCSCSAYANSDIRGGGSGCLLWFDDLIDIRDFTQNGQDFYVRMPASELASSSLNSSSKKKKKEVMVVSISITISIIGIVLLSLILTLYVLKKRKKQQKRKGYMEHNSDGGEKIEGQEHLELPLFDLDILLNATNYFSSDNKLGEGGFGPVYKGILQGGQEIAVKMLSKTSRQGIKEFKNEVESITKLQHRNLVKLLGCCIYGRERMLIYEYMPNKSLDLFIFDQMRSGTLDWLKRFLIINGIARGLLYLHQDSRLRIIHRDLKAENILLDNEMSPKISDFGIARSFGGNETEANTTRVAGTLGYMSPEYASEGLYSTKSDVFSFGVLVLEIVSGKRNRGFNHPDHDLNLLGHAWTLFIEDRSSEFIDASMGNICNLSEVLRSINLGLLCVQRFPEDRPSMHYVVLMLGGEGALPQPKEPCFFTDKNMMEANSSSGTQPTITLLEAR* 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4935374 4943417 - Vvi19g380 Vvi19g380 781879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g380 569 CDD PAN_AP_plant 82 167 - -
Vvi19g380 569 Pfam PAN-like domain 86 152 IPR003609 -
Vvi19g380 569 Pfam S-locus glycoprotein domain 9 65 IPR000858 GO:0048544
Vvi19g380 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 380 392 IPR008271 GO:0004672|GO:0006468
Vvi19g380 569 SMART serkin_6 259 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g380 569 Gene3D Phosphorylase Kinase; domain 1 218 334 - -
Vvi19g380 569 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 9 559 - -
Vvi19g380 569 Gene3D Transferase(Phosphotransferase) domain 1 335 535 - -
Vvi19g380 569 SMART ntp_6 87 166 IPR003609 -
Vvi19g380 569 CDD STKc_IRAK 265 530 - -
Vvi19g380 569 Gene3D Hepatocyte Growth Factor 83 165 - -
Vvi19g380 569 ProSiteProfiles PAN/Apple domain profile. 86 167 IPR003609 -
Vvi19g380 569 Pfam Protein tyrosine and serine/threonine kinase 262 460 IPR001245 GO:0004672|GO:0006468
Vvi19g380 569 SUPERFAMILY Protein kinase-like (PK-like) 244 554 IPR011009 -
Vvi19g380 569 ProSiteProfiles Protein kinase domain profile. 259 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g380 569 PANTHER - 9 559 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76455 PF07714 PK_Tyr_Ser-Thr 2.40E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g380 - - vvi:100262430 1081.63