Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g381 ATGAAATTTGGACGGAACAGAGTGACGGGGCTGGATCGGTACCTGTCATCATGGAAGACCACTGATGACCCCTCTATAGGTAATTTCACATATCGGCTTGATCCTGGTGGATCTCCACAACTACTGGTGAGGAATGGTTCAACTGTGACCTTCCGCTCTGGACCATGGAATGGTCTACGGTTCAGTGGTTTTCCTCAATTAAGGCCAAACTCTGTTTATAGCTATGCTTTCATTTTTAATGACAAGGAGACGTATTATACTTTTGAGCTTGTCAACAGCTCAGTCATTACGAGGCTGGTGTTAAGTCCTGAAGGCTACGCTCAGCGATTCACATGGATTGATCGAACCAGTGATTGGATCCTCTACTCATCCGCACAGACAGATGACTGCGACAGTTATGCATTGTGTGGTGTGTATGGCATCTGTGAGATCAACCGTTCTCCCAAATGTGAGTGTATGAAAGGGTTTGAGCCAAAGTTCCAGAGCAATTGGGACATGGCGGATTGGTCAGATGGATGTGTTCGGAGTACTCCAATGGTTTGTCAGAAGAGTAACGGGTTTTTAAAGTACTCTGGTGTGAAATTGCCCGACACCCGCAACTCCTGGTTTAATGAAAGCATGAACCTTAAGGAATGTGCATCCCTGTGCTTGGGGAACTGCTCTTGCACTGCTTATACAAATTCAGATATCAGAGGAGGAGGAAGTGGATGCTTGCTCTGGTTTGGTGACTTGATTGATATCAGAGAGTACACTGAAAACGGGCAAGATTTCTATATAAGGATGGCTAAATCAGAATTAGATGCTTTTGCAATGACAAATAGCGGTTCCAAAGGGGCGAAGCGGAAGTGGGTCATTGTCAGCACCGTGTCAATTGTGGGAATCATTCTCCTAAGCCTGGTCCTGACCTTGTATGTCCTGAGGAAGAAGAGGCTAAGGAGAAAAGAAATCAATGAAAGAGAGGAAGATCTAGAGTTACCATTATTTGACTTGGATACAATTTTGAATGCCACTGATAACTTTTCAAACGACAATAAGCTTGGAGAGGGTGGTTTTGGACCCGTCTATAAGGGTATGTTGCAAGATGGAAAAGAAATAGCTGTGAAAAGGCTGTCAAAAGAATCTAGACAAGGACTTGATGAGTTTAAAAATGAAGTTACACACATATCCAAACTTCAGCACCGAAATCTTGTGAAGCTTCTAGGATGCTGCATTCATGGGGAAGAGAAGATGCTGATCTACGAATACATGCCCAACAAAAGTTTGGATTTCTTCATTTTTGATGGAATGCAAAGCTTGGTATTAGATTGGCCTAAACGCTTTGTCATTATCAATGGTATTGCTCGTGGGCTTCTTTATCTTCATCAAGACTCCAGGCTCAGAATAATCCATAGGGATCTTAAAGCAGACAATGTTTTACTTGATAATGAGATGAACCCAAGAATTTCAGACTTTGGCATGGCTAGAAGTTTTAGAGGAAATGAATCTGAAGCAAGAACAAAACGGGTCGTTGGAACATATGGTTACATGTCTCCAGAATATGCCATCGATGGAGTGTACTCAATAAAATCAGATGTTTTTAGCTTTGGGGTTTTGGTGCTAGAGATTGTAACTGGGAAGAGAAACAGAGGATTTAACCACCCGGATCACGCCCTTAATCTTCTTGGGCATGCATGGACACTCTATATGGAAGGTAAGCCTTTGGAACTGATTGATGCATCCATGGGGGACTCCTGTAATCAATCTGAAGTGCTACGTGCTCTCAATGTGGGACTATTATGCGTACAACGTAGTCCAGATGATCGACCAAGCATGTCTTCTGTGGTTCTGATGTTGAGTAGTGAGAGTGCATTACATCAGCCTAAAGAGCCTGGTTTTTTCACTGAAAGAAACATGCTGGAAGGAAGTTCTTCAGCAAGCAAGCATGCAATTTTTTCTGGCAATGAACACACCATTACATTAATAGAGGGTCGATAG 1974 42.86 MKFGRNRVTGLDRYLSSWKTTDDPSIGNFTYRLDPGGSPQLLVRNGSTVTFRSGPWNGLRFSGFPQLRPNSVYSYAFIFNDKETYYTFELVNSSVITRLVLSPEGYAQRFTWIDRTSDWILYSSAQTDDCDSYALCGVYGICEINRSPKCECMKGFEPKFQSNWDMADWSDGCVRSTPMVCQKSNGFLKYSGVKLPDTRNSWFNESMNLKECASLCLGNCSCTAYTNSDIRGGGSGCLLWFGDLIDIREYTENGQDFYIRMAKSELDAFAMTNSGSKGAKRKWVIVSTVSIVGIILLSLVLTLYVLRKKRLRRKEINEREEDLELPLFDLDTILNATDNFSNDNKLGEGGFGPVYKGMLQDGKEIAVKRLSKESRQGLDEFKNEVTHISKLQHRNLVKLLGCCIHGEEKMLIYEYMPNKSLDFFIFDGMQSLVLDWPKRFVIINGIARGLLYLHQDSRLRIIHRDLKADNVLLDNEMNPRISDFGMARSFRGNESEARTKRVVGTYGYMSPEYAIDGVYSIKSDVFSFGVLVLEIVTGKRNRGFNHPDHALNLLGHAWTLYMEGKPLELIDASMGDSCNQSEVLRALNVGLLCVQRSPDDRPSMSSVVLMLSSESALHQPKEPGFFTERNMLEGSSSASKHAIFSGNEHTITLIEGR* 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4943926 4947171 - Vvi19g381 Vvi19g381 781880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g381 657 Gene3D Transferase(Phosphotransferase) domain 1 416 624 - -
Vvi19g381 657 ProSiteProfiles PAN/Apple domain profile. 181 262 IPR003609 -
Vvi19g381 657 SMART serkin_6 340 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g381 657 SMART ntp_6 182 261 IPR003609 -
Vvi19g381 657 Pfam Protein tyrosine and serine/threonine kinase 343 609 IPR001245 GO:0004672|GO:0006468
Vvi19g381 657 Pfam S-locus glycoprotein domain 51 160 IPR000858 GO:0048544
Vvi19g381 657 SUPERFAMILY Protein kinase-like (PK-like) 323 616 IPR011009 -
Vvi19g381 657 Pfam PAN-like domain 181 247 IPR003609 -
Vvi19g381 657 ProSiteProfiles Protein kinase domain profile. 340 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g381 657 CDD PAN_AP_plant 177 262 - -
Vvi19g381 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Vvi19g381 657 PANTHER - 1 654 - -
Vvi19g381 657 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 1 654 - -
Vvi19g381 657 Gene3D Phosphorylase Kinase; domain 1 303 415 - -
Vvi19g381 657 Gene3D Hepatocyte Growth Factor 178 261 - -
Vvi19g381 657 Pfam Domain of unknown function (DUF3403) 612 657 IPR021820 GO:0004674
Vvi19g381 657 CDD STKc_IRAK 346 611 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g580 Vvi19g381 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76456 PF07714 PK_Tyr_Ser-Thr 2.10E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g381 - - vvi:100262430 1270.37