Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g383 ATGGTGACCAAAGTGTATATTGTGTACTACTCTATGTATGGACATGTAGAGAAGCTCGCAGAAGAGATAAAGAAAGGAGCTGCATCTGTTGAAGGAGTTGAAGCCAAACTATGGCAGGTTCCTGAGACACTACCAGAGGAGGTCCTTGGCAAGATGAGTGCACCACCAAAAAGTGATACACCAATAATTACACCGACTGACCTTGCTGAGGCTGATGGATTTGTTTTCGGCTTCCCTACAAGATTTGGAATGATGGCTGCTCAATTCAAAGCGTTTCTTGATGCTACTGGTGGCCTATGGAGAACACAACAGCTTGCAGGTAAACCAGCTGGGATCTTCTATAGCACCGGATCTCAAGGTGGTGGACAAGAGACTACTGCGTTGACTGCAATTACTCAGCTGGTTCATCATGGGATGATCTTTGTTCCCATTGGATACACTTTTGGAGCTGGGATGTTTGAGATGGAGAAGGTGAAAGGCGGGAGTCCCTACGGTGCAGGAACTTTCGCTGGGGACGGCTCAAGACAACCATCTGAGCTCGAATTGGAGCAAGCTTTCCACCAGGGGAAGTACATTGCTGGCATCACAAAGAAACTCAAGGAAGCAGCTTAA 612 47.22 MVTKVYIVYYSMYGHVEKLAEEIKKGAASVEGVEAKLWQVPETLPEEVLGKMSAPPKSDTPIITPTDLAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPSELELEQAFHQGKYIAGITKKLKEAA* 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4962647 4967645 + Vvi19g383 Vvi19g383 781882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g383 203 SUPERFAMILY Flavoproteins 3 200 IPR029039 -
Vvi19g383 203 ProSiteProfiles Flavodoxin-like domain profile. 5 192 IPR008254 GO:0010181
Vvi19g383 203 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 3 199 IPR010089 GO:0003955|GO:0010181
Vvi19g383 203 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 1 203 - -
Vvi19g383 203 Coils Coil 199 203 - -
Vvi19g383 203 Pfam NADPH-dependent FMN reductase 17 144 IPR005025 GO:0016491
Vvi19g383 203 Gene3D - 1 201 IPR029039 -
Vvi19g383 203 PANTHER NAD(P)H DEHYDROGENASE (QUINONE) FQR1 1 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g383 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - vvi:100232919 404.445
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g383 . . . . Bpe09g00207 . Bma10g00523 Bma13g00995 Cmo16g00922 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0091 Cone9ag0120 Cone14ag1109 Cone15ag1123 . . . . Blo07g00931 Blo10g00789 Bda05g00749 Bda12g00874 . Bpe03g00814 . . . . . Cma04g00930 . Car04g00872 . . Cpe01g00845 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001002 3 2 2 5 4 3 4 2 3 2 2 2 4 2 2 4 2 3 2 3 2 2 2 3 3 3 2 3 3 1 80