Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g384 ATGCAAGGGCCTGATTCTTCCAGTGGCGGTGGCGGCGGTGGTGGCGTGTTGGCGGATCCCAATTTGCAGATGATGGGTCTAGGCCTATCATCCCAGGCCATGGATTGGAACCAAGCGTTATTGCGCAGTGGAAAAGCTGAGAGCAGCTTCGGTTCGATGCTTCAAGATCAAGACATGAGCTCGAATTCGAATTTTAACGCAGATCAAGCTCAATGGAGGCAGAAACTATTTTCGGGGAGCTGTGAAGATTCATCAGGGACCGAGTATAAGCAAGTGAACCGGGGTTTTTCGCTGGATCAGCCGCAGTTTAGTTCCCATAGCAGCCCCGGTGAAAGTACGGTGACATGCCAGGGCCTACCGACAAGTTTTCAGGTAGATTCCTCAGTGTATGGTAGTCCTTCCACCATACTACAAGGACTATTGGGATCAGATCATCAGCAAAACCAGTCTTCCTTCGAGAACCGACCGATGAATTATCCGTATTTAGGAACCTATGGCGTTAACTCTAATGAGTTCTTGCCTTCCTGGTCTAAAGTCCCTCAATTCTTGCGAACTTCACCTCCAAAACAGCCATCGCATACCCAGTTACACTTCTCCAACAACGCGCCCTTTTGGAATGCATCCGCGGCGGCCATGGCTGCTGACAGTAGACCCAGCTTCTCACCAACCTTGCAACCTCAATTTTCCACACCTACCTTCAATGAAAAACCAAAGAATTCTTCAGAGATTCGGGACATTAGCTCAGTGGCGAAGAAAAGTAGCGGTGAAACAGGAACCAAAAGGCCACGAAGTGAGACACCATCGCCTTTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCGCCTTTCGGAAAGACTGACACAGCCTCAGTGCTCTCTGAAGCTATTGAATACATCAAGTTTCTCCATGAACAAGTTAGTGCTTTGAGTACTCCATACATGAAAAGTGGAGCATCCATACAACACCAGCAGAATTCTGAGAAGTCTAAGGAGCCTGAAGGACCCAGACAGGATCTCAGAAGCCGAGGACTGTGTCTAGTACCCGTTTCAAGCACCTTCCCGGTCACCCATGAGACCTCTGTTGATTTCTGGACACCTACATTTGGAGGAACATTCAGGTAG 1155 48.74 MQGPDSSSGGGGGGGVLADPNLQMMGLGLSSQAMDWNQALLRSGKAESSFGSMLQDQDMSSNSNFNADQAQWRQKLFSGSCEDSSGTEYKQVNRGFSLDQPQFSSHSSPGESTVTCQGLPTSFQVDSSVYGSPSTILQGLLGSDHQQNQSSFENRPMNYPYLGTYGVNSNEFLPSWSKVPQFLRTSPPKQPSHTQLHFSNNAPFWNASAAAMAADSRPSFSPTLQPQFSTPTFNEKPKNSSEIRDISSVAKKSSGETGTKRPRSETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSALSTPYMKSGASIQHQQNSEKSKEPEGPRQDLRSRGLCLVPVSSTFPVTHETSVDFWTPTFGGTFR* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4971653 4974022 - Vvi19g384 Vvi19g384 781883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g384 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 313 IPR011598 GO:0046983
Vvi19g384 384 MobiDBLite consensus disorder prediction 218 264 - -
Vvi19g384 384 MobiDBLite consensus disorder prediction 47 67 - -
Vvi19g384 384 MobiDBLite consensus disorder prediction 328 352 - -
Vvi19g384 384 PANTHER TRANSCRIPTION FACTOR BHLH123 19 374 - -
Vvi19g384 384 MobiDBLite consensus disorder prediction 1 21 - -
Vvi19g384 384 CDD bHLH_AtbHLH_like 270 321 IPR045239 -
Vvi19g384 384 SMART finulus 275 319 IPR011598 GO:0046983
Vvi19g384 384 MobiDBLite consensus disorder prediction 216 275 - -
Vvi19g384 384 Gene3D - 274 340 IPR036638 GO:0046983
Vvi19g384 384 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 374 - -
Vvi19g384 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 329 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g384 - - - vvi:100267585 736.487
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g384 . . . . Bpe09g00206 . Bma10g00524 Bma13g00994 Cmo16g00923 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1110 Cone15ag1124 . . . . Blo07g00930 Blo10g00790 Bda05g00748 Bda12g00875 . Bpe03g00813 . . . . . . . Car04g00871 . . Cpe01g00844 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003787 2 3 2 3 2 1 2 1 1 1 1 1 2 2 1 2 1 2 1 1 1 1 1 1 1 1 1 2 3 1 45