Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g385 ATGCAGAGAAGATCCCATTTTTGGCCCACTTTGAAGGAGTTGCTCTACACTTTCTGTAATCACTTCAATAAGATTTCAGTCAACAGTCAACTTGTTCAAGGTCAATGTTCCTGTCTTGTCATTGCAGAGAGCATCCATGCATGCCATTTCCTCAATGGCCATCATTCTTTTAGTGATTGTATCCTGCTAAAAGACTTTCTTCGAGCACAAGATGGAATAAAAGAAGAAATCAGAATTGAAGCAGGGCATAGTCCCAAATCTGCCATGGATCTTCTGTGCAATGCGTACTCTACTCCTTCAGACGACGACGATGACGAACCACGACCAGTAGCAGAACCAACACCCCCTCCATTGAAGCGATTTAAACCCCAAAACCCTCCTCTCCTCCCCAAACCCTACCCTCTCATTGCTGGCAGATACATATCCAAGAGAGAGCGATCTCTCCTCAGCCCGGCCCTTTCTCCTCCCCTTCCGAATCCGGCTGCCTCTGCATCTCCTGTTATGGGTAGTATTTCAGATTCAGATCTACCACGTGATATCTTGTCATCATTGAGGCATCAAGCAAAGGGCCGTTCACAGCTAGGTCGAATATCTGAAAGGCTGTCCGTAGATTTGAAGAGCCACAAAAAGTCTGTCAATACTATTCAGTGGTCACCGACCCATGCCCATCTTCTTGCTTCCGCTGGAATGGATCATGCCATCTGCATATGGAATGCATGGAGTAGAGATCAGAAGAAAGCACGTGAATTCAGCTATCATAATGCAGCAGTGAAAGATGTCAAGTGGTTGCAGCAAGGATTATCTGTGCTTTCTTGTGGATATGACTGCTCGTCAAGATTAATTGATGTTGAGAAGGGGTTGCAAACTCAGATTTTTACAGAGGATCAGGTGGTTGGTGTCATAAAGCTCCATCCAGACAACTCCAACCTCTTCCTGTCTGGGGGATCAAAAGGACGCCTCAGATTATGGGATATTAGAACTGGCAAGGTAGTTCATGAATACATTCGAGGTCTTGGTCCAATACTTGACATTGAATTCACTGTTAATGCCAAACAATTTATCTCTTCCAGTGATGTGTCTGGAAGTAACATGAGTGAGAACTCTATTGTTGTTTGGGATGTCTCACGACAGGTTCCATTGTCTAATCAGGTTTATGTGGAAGCCTATACCTGTCCCTGCATTAGATGCCATCCATCTGATCCATTTTTCATTGCGCAATCAAATGGAAATTATATTGCAATCTTCTCGTCATGCCCTCCTTTCAAACTAGACAAGTACAAGAGGTATGAGAACCATGGGGTTTCTGGGTTCCCCATCAAGTGCAACTTCAGTTTGGATGGTGAGAAACTCGCCTCAGGCTCCTCGGATGGTTGTATATACCTTTATGACTACAGATCATCTGAACTTGTCCAAAAAATCAAGGCATATGAGCAAGCATGCATAGACGTTGCTTTCCATCCCCTCTTACCTAACGTGATTGCTGCATGCGGTTGGGATGGTGCGGTTTCAGTGTTTGAGTGA 1521 44.64 MQRRSHFWPTLKELLYTFCNHFNKISVNSQLVQGQCSCLVIAESIHACHFLNGHHSFSDCILLKDFLRAQDGIKEEIRIEAGHSPKSAMDLLCNAYSTPSDDDDDEPRPVAEPTPPPLKRFKPQNPPLLPKPYPLIAGRYISKRERSLLSPALSPPLPNPAASASPVMGSISDSDLPRDILSSLRHQAKGRSQLGRISERLSVDLKSHKKSVNTIQWSPTHAHLLASAGMDHAICIWNAWSRDQKKAREFSYHNAAVKDVKWLQQGLSVLSCGYDCSSRLIDVEKGLQTQIFTEDQVVGVIKLHPDNSNLFLSGGSKGRLRLWDIRTGKVVHEYIRGLGPILDIEFTVNAKQFISSSDVSGSNMSENSIVVWDVSRQVPLSNQVYVEAYTCPCIRCHPSDPFFIAQSNGNYIAIFSSCPPFKLDKYKRYENHGVSGFPIKCNFSLDGEKLASGSSDGCIYLYDYRSSELVQKIKAYEQACIDVAFHPLLPNVIAACGWDGAVSVFE* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4988164 5006408 + Vvi19g385 Vvi19g385 781884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g385 506 MobiDBLite consensus disorder prediction 111 130 - -
Vvi19g385 506 SMART WD40_4 285 324 IPR001680 GO:0005515
Vvi19g385 506 SMART WD40_4 243 282 IPR001680 GO:0005515
Vvi19g385 506 SMART WD40_4 466 506 IPR001680 GO:0005515
Vvi19g385 506 SMART WD40_4 327 373 IPR001680 GO:0005515
Vvi19g385 506 SMART WD40_4 198 238 IPR001680 GO:0005515
Vvi19g385 506 SMART WD40_4 424 463 IPR001680 GO:0005515
Vvi19g385 506 MobiDBLite consensus disorder prediction 151 170 - -
Vvi19g385 506 Gene3D - 183 506 IPR015943 GO:0005515
Vvi19g385 506 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 89 506 - -
Vvi19g385 506 Pfam WD domain, G-beta repeat 205 238 IPR001680 GO:0005515
Vvi19g385 506 SUPERFAMILY WD40 repeat-like 197 505 IPR036322 GO:0005515
Vvi19g385 506 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 238 - -
Vvi19g385 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 333 IPR001680 GO:0005515
Vvi19g385 506 MobiDBLite consensus disorder prediction 93 130 - -
Vvi19g385 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 238 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g385 K24742 WDR25; WD repeat-containing protein 25 - vvi:100250407 817.764
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g385 . . . . . . Bma10g00525 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1113 Cone15ag1127 . . . . Blo07g00929 . Bda05g00747 . . Bpe03g00812 . . . . . . . Car04g00870 . . Cpe01g00843 . . . . . . . . . . . . . . . . Chy06g01770 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008063 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 2 2 2 1 1 1 1 33