Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g388 ATGATCGATACGTATCTCAACACGCTCGCTACTGTACTGGGAAGCATGGAAGAAGCAAAGAAGAATATGTATGCTTTTAGCACCACCACATATACTGGGTTCCAATGCACTGTGTCTGAAGAAACATCTGAAAAATTCAAGGGGTTGCCTGGCGTTCTTTGGGTGCTGCCAGATTCATACATAGATGTTAAGAATAAGGATTATGGAGGTGATAAATACATAAATGGGGAGATCATTCCTTGCACATACCCTACTTACCAGCCAAAACAACGAAGAGAATCAAAATATGAGAGCAGAAGATATGAAAGACGAAGAGATGGCCCTCCTGCTGAAAAAAGACGACCACGACAAGAAGCAAGCCGCTCAGAATCAAATTCTGGATGA 384 42.19 MIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCTYPTYQPKQRRESKYESRRYERRRDGPPAEKRRPRQEASRSESNSG* 128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5032635 5035368 + Vvi19g388 Vvi19g388 781887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g388 127 MobiDBLite consensus disorder prediction 82 127 - -
Vvi19g388 127 MobiDBLite consensus disorder prediction 90 120 - -
Vvi19g388 127 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 1 126 IPR039206 GO:0016554
Vvi19g388 127 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 63 IPR037045 -
Vvi19g388 127 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 9, CHLOROPLASTIC 1 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g388 - - - vvi:100255654 240.35
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g388 . Blo03g01431 . . . . . . . . Cma01g01168 Cma09g00911 . Car09g00827 Sed07g2638 Cpe06g00732 . Bhi09g01970 Tan01g4478 Cmetu10g0573 . Hepe01g1331 Mch11g1130 . . . . . . . . . . . . Lsi04g01262 . Chy04g01042 . . . . . . . . Bma14g00369 . Cmo01g01223 Cmo09g00904 . . . Car16g00581 . . . . . . . . . Cla05g01560 Cam05g1667 Cec05g1672 Cco05g1714 Clacu05g1662 Cmu05g1555 Cre05g1668 . . . Cme04g00765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009391 0 1 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34