Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g39 ATGGGATTTAGTTTTGAAGGCCTGTGTTTTTTTCTTTCTTCTATTCTTCTTTTTCTTCTTTCATGGCTTCAACAATCCAGTGCAAGTGTAGAGCATCATAAGGCCATGCAACCCCAATTTGATGGCTGTGATTTCTTCAAAGGAACTTGGGTGGTGGATGATTCTTATCCCCTGTATGATTCCTCCATCTGTCCATTCATCAGTCCACACGTTGACTGTCAAAAAAATGGAAGGCCAGATAAGCTCTATCTCAAGTATAGATGGCAGCCCCATGGTTGTACATTGCCAAGATTCAATGGAGAGGATTTCTTGAAGAGGTTTAAGGGAAAAAAGATAATGTTTGTAGGAGATTCTCTAAGTGAAAATCAATGGCAATCACTCACTTGCCTGGTCCATGCTGCAATCCCCCAAGCACAAGTCAATAAAAGCAATAAGGGAAACCTCCAGACCATTACATGGCCGGAGTATGGGATTTCAATAACATTATGTTTCAATGCCTTTCTAGTAGATTTAGTACATGAGAAAAAGTTGGGCAGGGTACTAAAGATCGACTCCATTGAAGGTGGCCAATTATGGAAAGGTGTTGACACGCTCGTATTCAATACATGGCATTGGTGGCTCCACAATGGATCCATACAACCATGGGATTATATTCAAATAGGAGGAAAGTTGATTAAAGACATGGACCGTTTGGCTGCTTATAAAAGAGGACTAACTACTTGGTCCAAATGGGTAGACTTTAACATCAATCCTGCTATGACTAATGTGTTCTTCCAAGGCATTTCTCCGACGCATAATCTTGGTGAAGAATGGAAGGAGAAATTAGCAACATGCAAAGGACAAACTGAACCTATAAAAGGTTCAACATACCCTGGGGCTTTGCCACCGGCGGTAGGGGTGGTGAAGGAAGTTCTAAGCAAGATGTCGAAAGTCGTATCATTACTCGATATAACTATATTATCACAACTAAGGAAAGATGGACATCCATCTATATATAATGGTGTGAACACTGGATATGTTAAAATTTACCCAAAGGAGAATTTTAATGATATCAATAGTTCATTGTTTTTTATTTTATACTTGAAGCTTATTGTGAGCATTGTTATATTTTGTACAGTTCCCACTTCATTACACTCTCTTGCATCTGGAATGACTATTTTTGATGGGTCAAACTTTTCTGAATGGTATGAAAGGGGTCAATTCTCACTGGGTATATTGGATCTTGACTTGGCTTTAATATCTGATAAACCTCCTGAAGCTACGGATGACAGTACTCCGGAGCAGGTGGAACAATCAAAAGCCTGGTCAAAATCAAACAGACTCAGTCTGATGTTTATGAGAATGACTATTGCCAATAATATCAAGACCTCTCTCCCTCAAACCGAGTTTGCCTCGGAATTTCTGAAATCTGTTGAGGAGCGCTTCAAACGCGCTGATAAGTCCCTTGCAGGCACATTGATGGCTGAATTGACCACCATGAAATATGATGGTCAGAAAGGTATTCAGCAACATATTTTAAACATGACTGAAAAGACTGCAAAGCTTAAGGCACTAGGTATGGGTATGGATGAGTCCTTCTTGGTACAGTTTGTCCTTAACTCACTTCCATCACAGTTTGCTCCATTCAAAATCCACTATAATACCAACAGTGATCAGTGGAACTTGAATGAGCTCACCAGTAAATGTATACAAGAGGAAGTGAGATTAAGACAAGAAGGACATAATCTTGCTCTTGCTGTAACTCATGGAGTCACGAAGAAGAAAGGAAAATTCAAAAAGGGAAGGAACTTTCCACCTAAGAAAAGCGGACCTGGGGAAGGTAGCCAGAATCATGATGGAAAATTCACTGTAAGTTGCTACTTTTGTGGCAAGAAAGGGCATGTGAAGAAGGACTGTATCAAGCGCAAGGCTTGGTTCGAAAAGAGAGGTATAAATCTTTCTTTTGTATGTTATGAATCTAATCTTGCTGAAGTTCCTTCAAATACTTGGTGGATTGATTCTGGAGCCACAACTCATGTGACTAATTTAATGCAGGGATTCCTTACAACCAGGAAACCAAAGGAAAGTGAAAAGTTCCTCTATATGGGAAACCGTCTCAAGGTTGAAGTGGTAGCTGTTGGAACCTATCGCTTACTATTAGAGACGGGTCATCGGATGGATCTTTTAAACACTTTTTATGTACCTTCTATCTCTAGGAATTTAGTTTCCTTGTCTAAATTAGATGCTACTGGATATTCTGTTTTATTCAGTTCTGGACAATTAAGTTTGATGTTGAATTCTGTTACAATTGGTTCTGGTATTTTATGTGATGGTTTATATAAAATTTCCTTGAATCATGAATTTGCACAAGCTTTAATAACCCTGCATTCAAATGTTGGTTCAAAACGTGGCTTAATTAATGAAAATTCTTCAATCTTGTGGCACAGAAGACTAGGGCACATCTCTAGGGAAAGAATTGAAAGATTAGTGAAGGAAGGAATTTTACAAAATCTTGACTTCACTGATTTTCATGTATGCGTGAATTGCATAAAGGGAAAGCAAACTAAACATACAAAGAAAGGTGCCACAAGAAGTAATGAGCTCCTTGAGATAATTCATACAGATATTTGTGGACCACTCTCTATTCCATGTTTCACAGGAGAGAAATATTTTATCACCTTTATAGATGATCTATCTCGTTATGGTTATGTTTATCTAATGCATGAAAAGTCTCAAGCCATTGACATCTTTGAGATGTTCATAACAGAGGTCGAGAGACAATTAGATAAAAAGATTAAAATTGTGAGATCAGATCAAGGCGGTGAATATTATGGCAGATATGATGAATCAGGACAAAATCCTGGTCCTTTTGCCAAATTCCTTGAAAAGCATGGCATTCGTGCTCAGTACACAATGCCTGGTACGCCACAACAGAATGGTGTTGCTGAAAGGCGTAATCGCACATTAATGGAAATGGTTAGGAGTATGATGAGTTACTCTTCTGTACCTATTTCATTGTGGGGTGAAGCCTTAAAAACCGCAATGTATATCTTGAACAGAGTTCCTAGTAAGGCAGTTCCAAAAACTCCTTTCGAGTTATGGACTGGTAGGAAACCTAGCTTGAGACATATACATATATGGGGTTGTCCAGCGGAGGCAAGAATCTATAACCCACATGAGAAAAAGCTTGATTCAAGAACGGTATCTGGATATTTCATTGGCTATCCGGATAAATCGAAAGGGTACAGATTTTATTGTCCTAACCATAGTGTGAGAATAGTTGAAACCGGTAATGCCAGATTCTTAGAGAATGGCGAAATCAGTGGGAGTAATGAACCAAGAAAAGTAGATATTGAGGAGATAAGAGTGGATATCCCACCACCTTTTTTACCTCAAGAAATTATTGTTCCTCAACCTGTTCAACAAGTTGAGGATAATGAGCAAAATAATAGAGATGGTTCATTACCACTAGAAAATATTGCCATTGAAAATGCTGTAGAGCCACCACAACCGGCACCTTTGAGGAGATCTCAAAGAGAAAGGAGACCTGCCATTACAGATGATTATGTGGTTTTCTTGGTTCAACTTGCTTGTCTCCATGTACTCTCATATGTGCCATATATATTTTGTGGGGTGGAGCACATTAATCATGTGGACCATCACACACAAATAATGCGATCCAATGGCTGCAATTGGTTCTTGGGAAGTTGGGTCTACAATGATTCATACCCGTTTTATGATGCATCAAAATGTCCGTTCATTAGAAATGGTTCCAATTGCTTGAAGAATGGTAGACCCGATAAGGAGTACCTTAAGTATAAATGGAAGCCAAATGATTGTCATTTACCAAGATTCAATGGAGAGGATTTTTTGAAGAGGTTTAAGGGAAAGAAAATAATGTTTGTAAGGGATTCTTTAAGTGAAAATCAATGGCAATCACTTACTTGCATGGTTCATGCTGCAATCCCCCAAACACACTTCGACACAAGCATTAAGGGAGACCTCTATAGTATTGCATGGCCAGACTATGAAATTTCAATAATATTATGTCACAAGGTATTTCTAGTTGATTTAGTAAATGAATAA 4065 38.57 MGFSFEGLCFFLSSILLFLLSWLQQSSASVEHHKAMQPQFDGCDFFKGTWVVDDSYPLYDSSICPFISPHVDCQKNGRPDKLYLKYRWQPHGCTLPRFNGEDFLKRFKGKKIMFVGDSLSENQWQSLTCLVHAAIPQAQVNKSNKGNLQTITWPEYGISITLCFNAFLVDLVHEKKLGRVLKIDSIEGGQLWKGVDTLVFNTWHWWLHNGSIQPWDYIQIGGKLIKDMDRLAAYKRGLTTWSKWVDFNINPAMTNVFFQGISPTHNLGEEWKEKLATCKGQTEPIKGSTYPGALPPAVGVVKEVLSKMSKVVSLLDITILSQLRKDGHPSIYNGVNTGYVKIYPKENFNDINSSLFFILYLKLIVSIVIFCTVPTSLHSLASGMTIFDGSNFSEWYERGQFSLGILDLDLALISDKPPEATDDSTPEQVEQSKAWSKSNRLSLMFMRMTIANNIKTSLPQTEFASEFLKSVEERFKRADKSLAGTLMAELTTMKYDGQKGIQQHILNMTEKTAKLKALGMGMDESFLVQFVLNSLPSQFAPFKIHYNTNSDQWNLNELTSKCIQEEVRLRQEGHNLALAVTHGVTKKKGKFKKGRNFPPKKSGPGEGSQNHDGKFTVSCYFCGKKGHVKKDCIKRKAWFEKRGINLSFVCYESNLAEVPSNTWWIDSGATTHVTNLMQGFLTTRKPKESEKFLYMGNRLKVEVVAVGTYRLLLETGHRMDLLNTFYVPSISRNLVSLSKLDATGYSVLFSSGQLSLMLNSVTIGSGILCDGLYKISLNHEFAQALITLHSNVGSKRGLINENSSILWHRRLGHISRERIERLVKEGILQNLDFTDFHVCVNCIKGKQTKHTKKGATRSNELLEIIHTDICGPLSIPCFTGEKYFITFIDDLSRYGYVYLMHEKSQAIDIFEMFITEVERQLDKKIKIVRSDQGGEYYGRYDESGQNPGPFAKFLEKHGIRAQYTMPGTPQQNGVAERRNRTLMEMVRSMMSYSSVPISLWGEALKTAMYILNRVPSKAVPKTPFELWTGRKPSLRHIHIWGCPAEARIYNPHEKKLDSRTVSGYFIGYPDKSKGYRFYCPNHSVRIVETGNARFLENGEISGSNEPRKVDIEEIRVDIPPPFLPQEIIVPQPVQQVEDNEQNNRDGSLPLENIAIENAVEPPQPAPLRRSQRERRPAITDDYVVFLVQLACLHVLSYVPYIFCGVEHINHVDHHTQIMRSNGCNWFLGSWVYNDSYPFYDASKCPFIRNGSNCLKNGRPDKEYLKYKWKPNDCHLPRFNGEDFLKRFKGKKIMFVRDSLSENQWQSLTCMVHAAIPQTHFDTSIKGDLYSIAWPDYEISIILCHKVFLVDLVNE* 1355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 434982 456680 - Vvi19g39 Vvi19g39 781538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g39 1354 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 31 337 IPR029962 GO:0016413
Vvi19g39 1354 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 1212 1354 IPR029962 GO:0016413
Vvi19g39 1354 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 38 31 337 - -
Vvi19g39 1354 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 38 1212 1354 - -
Vvi19g39 1354 Pfam GAG-pre-integrase domain 771 847 IPR025724 -
Vvi19g39 1354 Pfam Integrase core domain 863 969 IPR001584 GO:0015074
Vvi19g39 1354 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 95 335 IPR026057 GO:0016740
Vvi19g39 1354 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 1275 1352 IPR026057 GO:0016740
Vvi19g39 1354 ProSiteProfiles Integrase catalytic domain profile. 856 1031 IPR001584 GO:0015074
Vvi19g39 1354 Pfam PMR5 N terminal Domain 42 93 IPR025846 -
Vvi19g39 1354 Pfam PMR5 N terminal Domain 1222 1274 IPR025846 -
Vvi19g39 1354 Gene3D - 853 1042 IPR036397 GO:0003676
Vvi19g39 1354 ProSiteProfiles Zinc finger CCHC-type profile. 619 632 IPR001878 GO:0003676|GO:0008270
Vvi19g39 1354 Pfam gag-polypeptide of LTR copia-type 435 571 - -
Vvi19g39 1354 SUPERFAMILY Ribonuclease H-like 859 1029 IPR012337 -
Vvi19g39 1354 SMART c2hcfinal6 618 634 IPR001878 GO:0003676|GO:0008270
Vvi19g39 1354 MobiDBLite consensus disorder prediction 588 610 - -
Vvi19g39 1354 SUPERFAMILY Retrovirus zinc finger-like domains 601 640 IPR036875 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g39 - - - atr:105420836 742.651
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g39 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00597 . . . . . . . . . . . . . . . Csa04g00826 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016955 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 6