Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g404 ATGTCTGTTCAGTCTTCAGTGGTACTTCTTGCTCCATCTAAAAACCTCAGCCCTGAGGTTGGCCGGCGCTGTGCAAATTTTCATCCCAGCATTTGGGGGGATCATTTCCTTTCTTATGCTTCTGAATTCACAAACACTGATGATCATTTGAAGCAACATGTCCAACAGCTGAAAGAAGAAGTGAGGAAGATGCTAATGGCTGCTGATGATGATTCTGCGCAAAAGTTGCTCTTGATTGATGCAATCCAACGGCTGGGAGTTGCTTACCATTTTGAGAGTGAGATTGATGAAGTATTAAAACACATGTTCGATGGTTCCGTTGTCTCTGCTGAAGAAGATGTTTATACTGCTTCTCTCCGATTTCGGTTACTAAGACAACAAGGGTACCATGTCTCATGTGATTTATTCAACAACTTCAAGGATAATGAAGGAAACTTCAAGGAATCCCTCAGCAGCGATGTGCGGGGAATGTTAAGCTTGTATGAAGCCACACATTTCAGGGTGCATGGAGAAGATATATTAGATGAAGCACTTGCTTTCACTACCACTCACCTTCAGTCCGCCACAAAGCACTCTTCAAATCCTCTTGCTGAACAAGTAGTTCATGCCCTGAAGCAGCCCATCCGAAAGGGGTTACCTAGGCTAGAGGCCAGGCATTATTTTTCTGTGTACCAAGCAGATGATTCTCATAACAAAGCTCTGCTGAAGCTAGCAAAGTTGGATTTCAACCTATTACAGAAATTACACCAGAAGGAGCTAAGTGACATTTCCGCGTGGTGGAAAGATTTAGACTTTGCACACAAGCTTCCTTTTGCAAGAGATCGGGTGGTGGAATGCTACTTTTGGATATTGGGGGTGTACTTTGAGCCCCAGTTTTTCTTCGCTAGAAGGATTCTCACTAAAGTAATAGCCATGACCTCTATTATTGATGACATCTATGACGTGTATGGTACACTTGAAGAACTCGAGCTCTTCACCGAAGCAGTTGAGAGGTGGGATATCAGTGCCATAGATCAACTGCCAGAGTACATGAGAGTGTGTTATCAAGCACTCTTATATGTATACAGTGAAATTGAGGAAGAAATGGCCAAGGAAGGAAGATCGTATCGGCTCTACTATGCAAAAGAAGCAATGAAAAATCAAGTAAGAGCATACTATGAGGAAGCCAAATGGCTTCAAGTGCAACAAATTCCAACCATGGAGGAGTACATGCCTGTGGCGTTAGTTACCTCTGCATACTCAATGCTGGCGACCACATCGTTTGTTGGAATGGGAGATGCTGTGACAAAAGAAAGCTTCGATTGGATTTTCAGTAAGCCTAAGATTGTAAGGGCTTCAGCCATAGTTTGCAGGCTCATGGATGATATGGTTTCCCACAAGTTTGAGCAGAAGAGAGGACATGTTGCCTCAGCTGTTGAATGTTACATGAAGCAACATGGTGCGTCGGAGCAGGAAACGCACAACGAATTTCACAAACAAGTAAGAGATGCATGGAAGGATATCAATGAAGAGTGCCTCATCCCAACAGCTGTCCCAATGCCCATCCTCATGCGAGTTCTAAATCTCGCACGTGTTATAGATGTTATATACAAGAATGAAGATGGCTATACTCATTCTGGGACTGTTCTAAAGGATTTCGTAACTTCCATGCTAATTGATCCTGTGCCAATATGA 1674 43.25 MSVQSSVVLLAPSKNLSPEVGRRCANFHPSIWGDHFLSYASEFTNTDDHLKQHVQQLKEEVRKMLMAADDDSAQKLLLIDAIQRLGVAYHFESEIDEVLKHMFDGSVVSAEEDVYTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDILDEALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDSHNKALLKLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVYSEIEEEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLATTSFVGMGDAVTKESFDWIFSKPKIVRASAIVCRLMDDMVSHKFEQKRGHVASAVECYMKQHGASEQETHNEFHKQVRDAWKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNEDGYTHSGTVLKDFVTSMLIDPVPI* 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5254956 5257674 + Vvi19g404 Vvi19g404 781903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g404 557 Pfam Terpene synthase, N-terminal domain 31 204 IPR001906 GO:0010333|GO:0016829
Vvi19g404 557 Gene3D - 70 230 IPR036965 GO:0010333|GO:0016829
Vvi19g404 557 CDD Terpene_cyclase_plant_C1 22 554 IPR044814 GO:0010333|GO:0016102
Vvi19g404 557 Gene3D Farnesyl Diphosphate Synthase 29 545 IPR008949 -
Vvi19g404 557 PANTHER OS04G0344100 PROTEIN-RELATED 18 548 - -
Vvi19g404 557 Pfam Terpene synthase family, metal binding domain 235 500 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vvi19g404 557 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 28 230 IPR008930 -
Vvi19g404 557 SFLD Terpene Cyclase Like 1 C Terminal Domain 230 556 IPR034741 -
Vvi19g404 557 SUPERFAMILY Terpenoid synthases 230 555 IPR008949 -
Vvi19g404 557 SFLD Terpene Cyclase Like 1 C Terminal Domain - Enzymatic 230 556 - -
Vvi19g404 557 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 18 548 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g404 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K23172 vvi:100232954 1094.34
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g556 Vvi19g404 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g404 . . . . . . . Bma13g00917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00832 . . Cpe14g00714 . . . . . . . . . . . . . . . Lsi05g00656 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337