Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g405 ATGGACTCGCGCCAGATTTTTGGATACAGTGTGACTGGTGCGGATCTATCCTTCACATCTTCCCATCCTACAGTCCCTTCGATACCTAATCGCCTATTTGGGTCCTTGAAATTTGATCTTGGGAACTCACCGAACTCTCCTTTTTCAAATCTGTTTGACTGTGACACTCTTACTACATTTAGCGATAGCCAGGAGCAGCACAGCTCCACGGAGAATCTTTCAGAACTCAGTGCTTCTTGTTCTTCAGTTGAAACCAACAGTTATTTTAACCATTTAAGTCCTTCTGTGGGCTGTCGGAGAGATAGTCTACAGGGCTATTCTAGTGGAACTTCACTTTTACAGAATGCAAGTCCTTGCCACAACATAAAACACGCTCTGCTGGAATTAGAATCTGCTCTTATGGCGCCTGATGCAGATGAAGTGACCACGCCAAGTCCTTCTCTTGGGGAAGATAGGGGACCACAGATACAGGTTCCAACACCAAGGGCATGGAGCCAAGAGGCCCAGGGGTCACTTGTGCTCCAACCTCAGCCATCCTTTTCTTCTATTGGGAAACGGCTAGCAGCAATTTCTGAGAAATTCAAAATTCCTGTAGAGTTCCATCCAGTGCCTGTTTTTGCTCCTGATATAACACAGGAAATGCTGGATGTGAGACCAGGTGAGGCTCTGGCTGTGAACTTTCCCCTCCAGCTCCACCACACCCCTGATGAGAGTGTTGATGTGAACAACCCAAGGGATGAGCTTCTGAGAATGGTGAAGTCACTTTCTCCTAAAGTGACCACTTTGGTGGAGCAAGAATCAAACACAAACACAACCCCTTTTTTCACTAGGTTCATAGAAACTCTAGACTACTACTCAGCAATGTTCGAGTCAATTGATGTGGCCTTGCCCAGGGAGAGAAAGGAGCGTATCAATGTAGAGCAGCACTGTTTAGCAAGGGATATTGTTAACATTATTGCTTGTGAGGGCAAGGAAAGGGTGGAGCGTCATGAGCTCTTCGGAAAGTGGAAATCCAGGTTGACAATGGCGGGTTTCCGGCAATACCCACTGAGCACTTACGTTAACTCAGTGATAAGGACCTTGCTTAGGTGCTATTCAGAGCATTATACCTTGGTGGAAAGGGATGGGGCAATGCTGTTGGGGTGGAAGGACAGGAACTTGGTATCAGCTTCGGCCTGGTATTGA 1185 46.92 MDSRQIFGYSVTGADLSFTSSHPTVPSIPNRLFGSLKFDLGNSPNSPFSNLFDCDTLTTFSDSQEQHSSTENLSELSASCSSVETNSYFNHLSPSVGCRRDSLQGYSSGTSLLQNASPCHNIKHALLELESALMAPDADEVTTPSPSLGEDRGPQIQVPTPRAWSQEAQGSLVLQPQPSFSSIGKRLAAISEKFKIPVEFHPVPVFAPDITQEMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDELLRMVKSLSPKVTTLVEQESNTNTTPFFTRFIETLDYYSAMFESIDVALPRERKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQYPLSTYVNSVIRTLLRCYSEHYTLVERDGAMLLGWKDRNLVSASAWY* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5275676 5279667 - Vvi19g405 Vvi19g405 781904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g405 394 ProSiteProfiles GRAS family profile. 113 394 IPR005202 -
Vvi19g405 394 MobiDBLite consensus disorder prediction 138 158 - -
Vvi19g405 394 Pfam GRAS domain family 177 393 IPR005202 -
Vvi19g405 394 PANTHER CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1 181 393 - -
Vvi19g405 394 PANTHER CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1 19 182 - -
Vvi19g405 394 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 182 IPR005202 -
Vvi19g405 394 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 181 393 IPR005202 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14421 PF03514 GRAS 2.30E-75 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g405 - - vvi:100267541 430.639