Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g407 ATGTATATTTGGGGAGGGGTAAAATATGGGGCTGAACATTGGGCTAGGCTAACCCAAGGCGCACTTTATCCTCAATGCTTGGTGCCGCCTCTACCATACACCCCAGCAAAACTCAGAGGGGTTGAAACAACAAAAATGGCAGCCATGGCTGCTCTGCAGAGCTCATTCACTTCGCTTTCTCTCTCCTCCAACTCTTTCTTAGGCCAACCCTTCTCTCCCCTTCTTTATCCTTCTCTGGCCAAGTCAACAGAGAAGCCATGTCCTATTGTAATGAGGCTTAAGCGATGGGAGCGGAAGGAATGCAAACCCAACAGCCTTCCGGTGCTACATAAAATGCATGTTAAGGTGGGAGATACAGTGAAAATAATATCTGGTAGGGAAAAGGGTAGAACTGGGGAGATCAGTAAGATATTTAGGCATAACAGCACTGTGGTGGTGAAAGACATAAACTTGAAGACAAAACATGTGAAGGGCAGAGGAGAGGACGAGCCTGGACAGATAATCAAGATTGAAGCGCCTATCCACAGCTCAAATGTGATGCTCTACTCCAAAGAACAGAATGTGGCTAGCCGGGTAGGTCATAAAATCCTAGAGAATGGAAAACGCGTTCGCTACCTCATAAAAACTGGGGAAATAATTGACAGTGCAGAGAATTGGGAGAGAGTGGTCAAAGACAAAGAGAAGACTGAAGTAGCTGCTGCTGCTTCTTGA 711 46.27 MYIWGGVKYGAEHWARLTQGALYPQCLVPPLPYTPAKLRGVETTKMAAMAALQSSFTSLSLSSNSFLGQPFSPLLYPSLAKSTEKPCPIVMRLKRWERKECKPNSLPVLHKMHVKVGDTVKIISGREKGRTGEISKIFRHNSTVVVKDINLKTKHVKGRGEDEPGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKILENGKRVRYLIKTGEIIDSAENWERVVKDKEKTEVAAAAS* 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5311061 5315097 + Vvi19g407 Vvi19g407 781906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g407 236 SUPERFAMILY Translation proteins SH3-like domain 110 212 IPR008991 -
Vvi19g407 236 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 149 213 IPR003256 GO:0003735|GO:0005840|GO:0006412
Vvi19g407 236 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 49 235 IPR003256 GO:0003735|GO:0005840|GO:0006412
Vvi19g407 236 Hamap 50S ribosomal protein L24 [rplX]. 112 208 IPR003256 GO:0003735|GO:0005840|GO:0006412
Vvi19g407 236 ProSitePatterns Ribosomal protein L24 signature. 117 134 IPR005825 GO:0003735|GO:0005840|GO:0006412
Vvi19g407 236 Pfam KOW motif 116 147 IPR005824 -
Vvi19g407 236 PANTHER 50S RIBOSOMAL PROTEIN L24, CHLOROPLASTIC 49 235 - -
Vvi19g407 236 TIGRFAM rplX_bact: ribosomal protein uL24 111 213 IPR003256 GO:0003735|GO:0005840|GO:0006412
Vvi19g407 236 CDD KOW_RPL26 117 181 IPR041988 GO:0003723
Vvi19g407 236 Gene3D - 107 212 IPR014722 -
Vvi19g407 236 SMART kow_9 113 140 IPR005824 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g407 K02895 RP-L24, MRPL24, rplX; large subunit ribosomal protein L24 - vvi:100250357 368.622
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g407 . . . . Bpe09g00201 . . Bma13g01020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00800 . Bda12g00881 . . . . . . . . . . . Cpe14g00712 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012446 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 0 1 1 1 1 0 1 1 1 1 28