Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g410 ATGCCAACAGTTTGGCTTTCCCTGAGGAGATCTCTGCATTGCAAATCAGAGCCATCAGATGTCCATGATCCAAAGGCCAGGAGACAACTGAGCACAATCTTGACTAAAAAACCATGCAGGTCTGGTTGTTCAAGGTCTATAGCAAATCTGAAAGATGTCATCCATGGAAGTAAGAGACACATGGAGAAGCCACCAAGTTGCAGCCCAAGATCTATTGGGAGCAGTGAATTTCTAAACCCAATAACCCATGAAGTGATTCTCAGCAATTCAAGGTGTGAGCTTAAAATCACTGGCCACCCTACAATGCACTATTTCAAGAGCCCATCAACTCCTCCAAGAAAGTCCCCTTTTCTTTTATCAGATAGAGAAGGGTCTGGATTTGGGGGTTCTACCATTTTTGGGGGTGGAAGTGGAGCTATTCATTCAAACAATAGGGCTTCCCTTGACACAGATTCTAATGGGACTTCAGCAGTCACATGCCATAAGTGTGGTGAGCAGTTTAGCAAGTGGGAAGCTGTTGAAACTCATCATCTCTCTAAGCATGCAGTTACTGAACTTGTGGAAGGCGACTCATCAAGGAAAATCGTTGAAATAATATGCCGTACAAGTTGGTTGAAATCTGAGAATCATTGTGGCAGAATTGAGAGGGTGTTGAAGGTTCACAACATGCAGAAGACTCTTGGTCGATTTGAAGAATATAGGGAAATGGTGAAGACAAAAGCCAGCAAACTCCCCAAGAAACATCCACGCTGCCTAGCCGATGGGAATGAGCTCCTGAGGTTCTATGGCACAACCATGACTTGTGCGCTTGGGGTTAATGGTTCCTCCAATCTCTGCATATCAGATAAATGCTGTGTTTGTAGAATTATAAGACATGGGTTCTCTGCTAAGAAGGAGCTCAAGGGTGGGATAGGGGTTTTCACCACTTCCACAAGTGGGAGAGCTTTTGAATCTATAGAAGTCTATGACGAAGATCCATCTATAAGGAAGGCATTGATAGTTTGCAGAGTGATTGCTGGAAGGGTTCATAGGCCCCTGGAGAACATTCAAGACATGGCTGGCCAATCCGGGTTTGATTCATTGGCTGGAAAAGTGGGTCTATATTCAAATATTGAGGAGCTCTATTTGCTGAATCCTAGAGCTCTCCTTCCTTGCTTTGTGGTAATCTGCAAACCTTGA 1179 44.27 MPTVWLSLRRSLHCKSEPSDVHDPKARRQLSTILTKKPCRSGCSRSIANLKDVIHGSKRHMEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGHPTMHYFKSPSTPPRKSPFLLSDREGSGFGGSTIFGGGSGAIHSNNRASLDTDSNGTSAVTCHKCGEQFSKWEAVETHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENHCGRIERVLKVHNMQKTLGRFEEYREMVKTKASKLPKKHPRCLADGNELLRFYGTTMTCALGVNGSSNLCISDKCCVCRIIRHGFSAKKELKGGIGVFTTSTSGRAFESIEVYDEDPSIRKALIVCRVIAGRVHRPLENIQDMAGQSGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP* 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5329127 5331056 - Vvi19g410 Vvi19g410 781909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g410 392 Gene3D - 173 391 - -
Vvi19g410 392 ProSitePatterns Zinc finger C2H2 type domain signature. 160 181 IPR013087 -
Vvi19g410 392 PANTHER - 2 115 - -
Vvi19g410 392 PANTHER - 130 392 - -
Vvi19g410 392 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 115 - -
Vvi19g410 392 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 130 392 - -
Vvi19g410 392 SUPERFAMILY ADP-ribosylation 183 391 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14422 None None None None Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g410 - - vvi:100260605 773.467