Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g414 ATGCCACCTCGGCCACCCCAACCTATAGGTACAGGTTTAAAGGCATCTCAACCATCAACTTCTGCACCAAATGCTCCTAGTGAAGGAGGTGTCTCAGGGAGTGAAGCTGATGCTCCTAAGACCAAGCTAAAGCCATTCTTCTGGGATAAGGTTCTAGCAAACCCTGATCATTCAATGGTTTGGCATCAAATAAAATCCGGGTCATTCCAGTTCAGTGAGGAGATGATTGAAACTTTATTTGGGTATGCTCCTCCAGAAAAAAACAAAACTGTGCGCAAGGAGTCTTCTGCCCAAGATTCTTCTAGCCAGTATATTCAACTTATCGATTCAAAAAAATCACAAAATTTAGCTATTCTTCTACGGGCATTGAATGTGACAACAGAAGAATTTTGTGATGCCATTCAGGAAGGAAATGAGCTTCCTGTGGAGCTGCTTCAGACGTTATTGAAGATGGCACCCACAGCAGAAGAAGAATTAAAACTTAGGTTATTCAGTGGCAACCTTTCCCAACTTGGGCCTGCAGAGCGGTTCCTCAAAGTCTTGGTCGACATCCCATTTGCCTTTAAACGGCTTGAATCATTACTTTTCATGGGTTCTCTTCAGGAGGACATCTCGATGCTTAAAGAATCCTTTGCAACTCTAGAGGCTGCTTGTAAGGAACTCAAAAGCAGTCGGCTGTTCCTCAAACTTCTAGAGGCTGTTTTAAAAACTGGCAATCGCATGAATGATGGAACATTTCGTGGTGGTGCACAAGCATTTAAACTTGACACGCTTCTGAAACTAGCAGATGTAAAGGGAGTAGATGGCAAGACCACCCTATTGCACTTTGTTGTTCTGGAGATAATTCGCTCTGAAGGTGTACGGGCAGTTCGTGCAGCTAGAGAAAGTCGGAGCTTGTCCAGCATCAAATCTGATGATCTCCTGGAGGACCCTTCCCAAGATTCTGAAGAGCACTATCGTAGCCTTGGTCTTCAGGTGGTTTCAGGATTGAGTGATGAGCTTGAAAACGTCAGGAAAGCCTCAGTTTTAGATACTGATGGCTTAAAAGAAACTGTCGCCAAAGTTGGCAATGAACTGCTAAAAACCCGTAATTTCCTGAATTCAGATATGAGGAATATAGACAACAAAAATGGTTTTTGCCAAACACTAGAGAGTTTTGTGCAGCATGCTGAGGTTGACATCACATGGCTACTGGAGGAAGAAAAAAGAATAACAGCTTTGGTGAAGAGCACGATTGATTACTTCCATGGGAATGCAGGGAAGGATGAGGGCTTGAGATTGTTTGTTATAGTTCGGGATTTCCTAATAATGTTAGACAAGGCATGCAAACAGGTGAGAGATGCTCCAAAGAAGCCTAGGCCACAGAAGAAAGAGGTTCCTACAGCGCAACCTTCTTCTGATACCCGGCAGCCAGCTTCTCCTGATATTCGCCAGAAGCTTTTTCCGGCGATAGTGGATCGGCGGATGGATTATTCTAGTTCAGATGAGGAGAGTCCTTAG 1500 44.07 MPPRPPQPIGTGLKASQPSTSAPNAPSEGGVSGSEADAPKTKLKPFFWDKVLANPDHSMVWHQIKSGSFQFSEEMIETLFGYAPPEKNKTVRKESSAQDSSSQYIQLIDSKKSQNLAILLRALNVTTEEFCDAIQEGNELPVELLQTLLKMAPTAEEELKLRLFSGNLSQLGPAERFLKVLVDIPFAFKRLESLLFMGSLQEDISMLKESFATLEAACKELKSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGVDGKTTLLHFVVLEIIRSEGVRAVRAARESRSLSSIKSDDLLEDPSQDSEEHYRSLGLQVVSGLSDELENVRKASVLDTDGLKETVAKVGNELLKTRNFLNSDMRNIDNKNGFCQTLESFVQHAEVDITWLLEEEKRITALVKSTIDYFHGNAGKDEGLRLFVIVRDFLIMLDKACKQVRDAPKKPRPQKKEVPTAQPSSDTRQPASPDIRQKLFPAIVDRRMDYSSSDEESP* 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5361073 5369818 - Vvi19g414 Vvi19g414 781913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g414 499 MobiDBLite consensus disorder prediction 459 473 - -
Vvi19g414 499 SMART it6_source 33 453 IPR015425 -
Vvi19g414 499 MobiDBLite consensus disorder prediction 12 28 - -
Vvi19g414 499 SUPERFAMILY Formin homology 2 domain (FH2 domain) 103 458 - -
Vvi19g414 499 MobiDBLite consensus disorder prediction 481 499 - -
Vvi19g414 499 Pfam Formin Homology 2 Domain 35 438 IPR015425 -
Vvi19g414 499 MobiDBLite consensus disorder prediction 1 38 - -
Vvi19g414 499 PANTHER FORMIN-LIKE PROTEIN 3 2 497 - -
Vvi19g414 499 PANTHER FORMIN-RELATED 2 497 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vvi19g414 499 Gene3D Formin, FH2 domain 38 472 IPR042201 -
Vvi19g414 499 MobiDBLite consensus disorder prediction 445 499 - -
Vvi19g414 499 ProSiteProfiles Formin homology-2 (FH2) domain profile. 33 464 IPR015425 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g553 Vvi19g414 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g414 - - vvi:100260550 964.14