Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g417 ATGGTGGGACCGGCGAACAGCGGCAGAACTCGGCAAGCATTTTCGGTGGTGAATGGCGGTCAGGAGAATGGCGGCCCTCCAAGTAGTGCGGGGTCGGAATGTGGAGGCATCGAGTTTACTAAGGAGGATGTTGAGGCATTGTTGAATGAGAAAATGAAGGGCAAGAACAAGTTCAATTTGAAGGAGAAATGTGATCAAATGATGGACTATATTAGAAAGCTTAGGCTTTGCATCAAATGGTTCCAAGAGCTTGAAGGAAGCTATCTCTTAGAGCAGGAGAAGCTACGGAATATGTTAGATTGTGCAGAGAGAAAATGCAATGAATTGGAGGTGCTAATGAAAAACAAAGAAGAGGAGCTGAATTCCATTATAATGGAGTTGAGGAAGAATTGTGCATCCCTACATGAGAAATTGACGAAGGAAGAATCGGAAAAGTTGGCTGCAATGGACTCTCTAACAAGAGAAAAAGAGGCTAGGCTTGCTGCTGAGAGATTACAAACTTCTCTCACAGATGAGCTCGGAAAAGCTCAACGAGAGCACTTAAGTGCTAGTCAGAAGATAACATCTCTTAATGATATGTACAAGAGATTACAAGAGTACAACACAAGTTTACAGCAATACAATAGTAAACTTCAGACAGAGCTTCCCACAGTGAATGAAGCTCTTAAACGTGTGGAGAAAGAGAAAGCTGCTGTAGTAGAGAACCTCAGCACTTTAAGAGGTCACTATAATGCATTGCAGGATCAGTTCACTTTGACCAGAGCTTCTCAAGATGAGGCTATGAAGCAAAGAGAAGCTTTGGTGAATGATGTTGTGTGCTTAAGGGGGGAGTTGCAACAGGCAAGAGATGATCGTGATCGCTATTTGTCACAAGTGGAAGTTTTAACAACTGAAGTAGTGAAGTATAAGGAATGTACTGGGAAATCCTTTGCTGAGTTGGAAAACCTATCACTAAAATCAAATGAGCTGGAGGCAAGATGTTTGTCACAAAGTGACCAGATAAAAGCATTGCAAGACAAGCTAGGAGCTGCAGAGAAGAAATTACAGGTGTCGGATTTGTCTGCAATGGAGACAAGAACTGAATATGAAGAGCAAAAGAAATTGATTCATGACTTACAAAATCGCCTGGCTGATGCAGAGATTAAAATTATTGAAGGAGAGAAGCTACGTAAAAAGTTGCATAATACTATTTTGGAACTTAAAGGAAACATCCGTGTATTCTGTAGAGTGCGGCCTCTATTGGCAGATGACTCTGCTGCAGAAGCAAAGGTCATTTCTTATCCCACTTCAACAGAGTTTTTTGGGCGGGGCATCGATTTAATGCAAAGTGGCCAAAAGCATTCGTTCACCTTCGACAAAGTGTTTATGCCTGATGCACCGCAACAGGAAGTCTTTGTAGAAATCTCACAGCTTGTACAGAGTGCTCTGGATGGTTATAAGGTATGTATTTTTGCATATGGTCAGACAGGCTCAGGTAAGACTCATACCATGATGGGCAGGCCAGGAAACCCAGAGCAAAAAGGGTTGATACCTCGCTCTCTAGAACAGATATTTGAGACCAGACAGTCTCTTAAATCCCAAGGATGGAAATATGAAATGCAGGTTTCAATGTTGGAAATATATAATGAAACAATTCGTGATTTGTTATCAACAAATCGATCCTGCTCTGATGTCTCACGAACAGAAAATGGTGTTGCTGGAAAGCAGTATGCAATCAAACACGATGGAAATGGCAATACTCATGTTTCTGATCTTACTGTTGTGGATGTTCGCAGCACTAGAGAAGTTTCATTTCTTCTAGATCAGGCTGCACAAAGCAGGTCTGTGGGCAAAACACAGATGAATGAGCAATCATCCAGAAGTCATTTTGTGTTCACTCTGCGGATATCTGGTGTTAATGAGAGCACTGAACAACAAGTACAAGGTGTTTTGAACCTTATTGATCTTGCGGGCAGTGAACGACTTTCTAAGAGTGGATCAACAGGGGACCGTTTGAAAGAAACCCAAGCCATCAATAAGAGTCTGTCATCATTAAGTGATGTTATATTTGCCCTGGCAAAGAAGGAGGACCATGTACCATTTAGGAACTCAAAGCTTACGTATCTTCTTCAGCCTTGTTTAGGTGGGGACTCCAAGACCTTGATGTTTGTGAACATCTCTCCTGATCCTTCCTCATTGGGAGAGTCGCTTTGCTCCCTACGTTTCGCAGCCAGGGTTAATGCTTGTGAGATTGGGATTCCTAGACGTCAAACAAACATGCGGCCATCAGATTCTCGCCTGAGCTATGGCTGA 2292 42.5 MVGPANSGRTRQAFSVVNGGQENGGPPSSAGSECGGIEFTKEDVEALLNEKMKGKNKFNLKEKCDQMMDYIRKLRLCIKWFQELEGSYLLEQEKLRNMLDCAERKCNELEVLMKNKEEELNSIIMELRKNCASLHEKLTKEESEKLAAMDSLTREKEARLAAERLQTSLTDELGKAQREHLSASQKITSLNDMYKRLQEYNTSLQQYNSKLQTELPTVNEALKRVEKEKAAVVENLSTLRGHYNALQDQFTLTRASQDEAMKQREALVNDVVCLRGELQQARDDRDRYLSQVEVLTTEVVKYKECTGKSFAELENLSLKSNELEARCLSQSDQIKALQDKLGAAEKKLQVSDLSAMETRTEYEEQKKLIHDLQNRLADAEIKIIEGEKLRKKLHNTILELKGNIRVFCRVRPLLADDSAAEAKVISYPTSTEFFGRGIDLMQSGQKHSFTFDKVFMPDAPQQEVFVEISQLVQSALDGYKVCIFAYGQTGSGKTHTMMGRPGNPEQKGLIPRSLEQIFETRQSLKSQGWKYEMQVSMLEIYNETIRDLLSTNRSCSDVSRTENGVAGKQYAIKHDGNGNTHVSDLTVVDVRSTREVSFLLDQAAQSRSVGKTQMNEQSSRSHFVFTLRISGVNESTEQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPSSLGESLCSLRFAARVNACEIGIPRRQTNMRPSDSRLSYG* 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5386844 5394439 + Vvi19g417 Vvi19g417 781916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g417 763 PANTHER KINESIN-LIKE PROTEIN KLP-3 4 763 - -
Vvi19g417 763 MobiDBLite consensus disorder prediction 1 35 - -
Vvi19g417 763 CDD KISc_C_terminal 401 744 - -
Vvi19g417 763 Coils Coil 264 298 - -
Vvi19g417 763 PANTHER KINESIN-LIKE PROTEIN 4 763 - -
Vvi19g417 763 SMART kinesin_4 401 750 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g417 763 Pfam Kinesin motor domain 409 740 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g417 763 Coils Coil 92 144 - -
Vvi19g417 763 ProSiteProfiles Kinesin motor domain profile. 403 742 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g417 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 740 IPR027417 -
Vvi19g417 763 PRINTS Kinesin heavy chain signature 478 499 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g417 763 PRINTS Kinesin heavy chain signature 612 629 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g417 763 PRINTS Kinesin heavy chain signature 643 661 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g417 763 PRINTS Kinesin heavy chain signature 692 713 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g417 763 Gene3D Kinesin motor domain 343 744 IPR036961 -
Vvi19g417 763 Coils Coil 355 389 - -
Vvi19g417 763 Coils Coil 190 228 - -
Vvi19g417 763 Coils Coil 320 340 - -
Vvi19g417 763 MobiDBLite consensus disorder prediction 8 28 - -
Vvi19g417 763 ProSitePatterns Kinesin motor domain signature. 642 653 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g417 K10405 KIFC1; kinesin family member C1 - vvi:100248639 1482.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g417 Blo03g00584 . Bda07g00337 . . . . . . . Cma01g01154 Cma09g00922 . Car09g00838 . Cpe06g00742 Cpe02g00747 Bhi09g01950 . . . . . . . . . . . . . Cone6ag0089 Cone9ag0105 . . Lsi04g01248 . . . . . . . Bpe11g00523 . . Bma14g00358 . Cmo01g01207 Cmo09g00919 . . . Car16g00566 . . . . . . . . . Cla05g01542 Cam05g1650 Cec05g1655 Cco05g1694 Clacu05g1643 Cmu05g1538 Cre05g1648 . . . Cme04g00801
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006975 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34