Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g418 ATGGCTCACTTAGCAAATTTACATGGAGCCTCTGAGACCCTACCATCCATCTTTAAGCTTAGGGGCGATCTCCGAAGGACCAGAAAAAGAGTGACCATAATTGGATTTCTTTGCAAGAAAGCTGAGCAGATTCAAGAACAATCATTCCAAGCTACAAGAAGATCAGCTCTAGGCCTGTCCTCAATAGCCATTCTTGGGAATTCTGGGATTGGCCCTGCTCTTGCTGAGGACAATGGATACTGGCTCACAGGCCCTTTACCGGTCCCAACGGTCGATAACGACATCGTGAATAAGGAGACTGGCACTCGTTCTTTTCTCAAGAAAGGACTGTATATTGCGGATGTGGGAACTAAAGGGAGAATGTTGAGGCTAAAGAAATATGCATTTGATCTCATAGCATTGGAGGACTTGATGGACAAAGATGCCTGGAACTATTTTACGAAGTACCTGCGCCTTAAGTCCACCTTCATGTACTATGATTTTGATAAATTAATCTCTGCAGTGCCGGTTGACGAGAAGCAGCCTCTCACTGATCTGGCGAACAGATTGTTCGACTGTGTGGAAAAGCTTGAAGATGCTGTGAAGATTCGTGATATTTCCCAGACGGAATCACGCTACAAAGACACGAAGACTGTTCTCCAAGAGGTCATGGATAGGATGGCATAA 666 45.05 MAHLANLHGASETLPSIFKLRGDLRRTRKRVTIIGFLCKKAEQIQEQSFQATRRSALGLSSIAILGNSGIGPALAEDNGYWLTGPLPVPTVDNDIVNKETGTRSFLKKGLYIADVGTKGRMLRLKKYAFDLIALEDLMDKDAWNYFTKYLRLKSTFMYYDFDKLISAVPVDEKQPLTDLANRLFDCVEKLEDAVKIRDISQTESRYKDTKTVLQEVMDRMA* 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5394485 5395614 - Vvi19g418 Vvi19g418 781917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g418 221 Gene3D - 83 221 IPR023222 -
Vvi19g418 221 SUPERFAMILY Oxygen-evolving enhancer protein 3, 111 221 IPR023222 -
Vvi19g418 221 Pfam Oxygen evolving enhancer protein 3 (PsbQ) 26 221 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Vvi19g418 221 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTIC 1 221 - -
Vvi19g418 221 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC 1 221 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g418 K08901 psbQ; photosystem II oxygen-evolving enhancer protein 3 - vvi:100253736 439.113
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g418 . . . . Bpe09g00197 . . Bma13g01024 . . Cma01g01153 . . . Sed07g2652 . Cpe02g00748 Bhi09g01948 Tan01g4503 Cmetu04g3024 . Hepe01g1313 Mch11g1150 . . . . . . . . . . . Cone15ag1136 Lsi04g01247 . Chy04g01018 . . Blo10g00803 . Bda12g00884 . . . . . Cmo01g01206 . . . . Car16g00565 . . . . . . . . . Cla05g01541 Cam05g1649 Cec05g1654 Cco05g1693 Clacu05g1642 Cmu05g1537 Cre05g1647 . . . Cme04g00802
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011918 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30