Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g42 ATGCCCTCCATTAACAGCCTTCTCTCTTCTTTACTCATTGCCTTCGCTTTCTTCACAACTCTCACCTTCTCTGCAACTCTCCTCCCAAATAATGAAGTGGAAGCTCTGGAAGAGATCGCGAAAACTCTGGGGAAGACGGACTGGAACTTCAGTGCGGATCCGTGCGGCGGCGAGTGGGGTTGGGCGACGAAGAATCCGGTGAAGGGGTCGGAAAATGCTGTCACTTGTAGCTGCACCAACAACACTGTTTGCCACGTTGTTAGCATAGTCCTCAAGACTCAGAATCTCCCGGGATCTCTCCCACCAGAGCTGGTGAAGCTTCCTTACCTCCAAGAAATTGACTTCACCCGCAACTACCTCAACGGTTCAATCCCTCCAGAATGGGGTACAATGCAACTAGTAAACATTTCTCTGATCGGAAACCAATTAACGGGTTCGATTCCCAAAGAGCTTGGAAACATCTCTACTCTTGCAAACCTAACCGTGGAGTTCAATCAGCTTTCAGGGGTTCTTCCTCAGGAGCTTGGGAATCTGCCCAGTATAGAGAGAATACTTCTTACCTCAAACAACTTCACTGGGGAGTTACCACAAACATTTGCAGGGCTTACCACATTGAAGGACTTTCGGGTTGGAGATAATCAGTTCACAGGAAAGATACCCAATTTTATACAGAACTGGACAAAACTTGAAAAATTAGTGATTCAAGGGAGTGGTTTCAGTGGGCCGATTCCTTCTGGCATTGCCCTTTTGACAAAAATAACTGACTTGAGAATCAGTGACCTGAATGGAACTGAAGCAACTTTTCCACCATTGAGTGATATGAGAGACTTGAAAACACTGATATTGAGGAGTTGCAATATTGTTGACCCGCTACCTGATTACCTTGGGGAAATGACAAAATTGAAAACCCTAGATCTGAGTTTTAACAAACTAACTGGAGAAATTCCAAGCAGCTTTGTCGGTCTATCAAATGCAGATTACATGTATTTTACCGGAAACATGCTAACTGGAGCCGTGCCTGATTGGATGCTGAAAAGAGGAGACAACTATGATCTTTCATACAATAACTTTACTAGTGAAAGCTCAAGAGGATGTCAAGAACGGAGTGTAAATTTGTTTGGAAGCTCATCAGGAGGAAATAACTCTGGAATTGTCTCGTGCTTGAGAAGCTTTAATTGCCCAAAAAAGTTTTACTCCATGCACATAAATTGTGGTGGAAAAGAAGTAATTGTTGATGGAAATACCACATATGAAGATGACACAGATTCTGGTGGACCATCAAAGTTCTATCAGAGTAGAACAAACTGGGCATTCAGCAGCACAGGTCACTTCATGGACGATGACCGCCCTACGGACTCCTTTATTGGGACAAACGTGTCTAGACTCATCATGGAAAATTCTGGACTGTATACAACCGCACGCCTCTCTGCCCTGTCTCTCACTTATTATGGATTCTGTCTGGAAAATGGAAACTACACAGTAAAGCTTCACTTTGCAGAGATCACCTTTACTGATGACAAAACATATAGCAGCCTTGGTAGGCGTTTGTTTGATGTTTATGTTCAGGATAAGTTGGTTCTCAAGGATTTCAATATTGAGGATGAAGCAGGAGGTGTTAGCAAGGAAATCTTAAAATATTTTACTGCAGTTGTGACTAATAATACCTTGGAAATTCGCTTCTATTGGGCTGGGAAAGGGACTACAGGTATCCCAGTTAGAGGAGTTTATGGTCCTCTTATATCAGCTATTTCTGTGGACCCTGATTTTATACCTCCTACCGAAAATGGAAGCAGTAGTATATCTGTTGGCGTTGTGGTTGGCATTGTGGCTGGAGTCATTCTTCTTGTCTTCCTGCTTATAGGTATCCTTTGGTGGAGAGATTGCCTAAGGCGCAAAGATACGTTGGAACAAGAGTTAAAGGGTCTAGATCTGCAGACTGGCTTGTTTACCTTAAGGCAAATTAAGGCTGCAACAAACAACTTTGATGCTGCCAACAAAATTGGAGAAGGTGGATTTGGTTCTGTTTACAAGGGCGTCTTATCCGATGGCACCATAATTGCAGTGAAGCAGCTTTCTTCCAAATCAAAACAAGGAAACCGTGAGTTTGTGAATGAGATAGGCATGATTTCTGCTCTTCAACATCCTCATCTTGTGAAGCTCTATGGCTGTTGTATAGAAGGAAATCAGTTGTTGCTGATATACGAGTACATGGAAAATAACAGCCTCGCTCGTGCTTTGTTTGGCCCCGAAGAATGTCAATTACAATTGGATTGGCCAACTAGACACAGGATCTGTGTTGGCATAGCAAGAGGGTTGGCTTATCTTCATGAAGAATCAAGGCTGAAGATCGTCCACCGAGACATCAAGGCCACAAATGTGCTACTTGATAAGGATCTTAACCCCAAAATATCTGACTTTGGTTTGGCCAAACTTGATGAAGAGGATAACACCCACATTAGCACTCGGATTGCTGGTACATATTTTGGAGTTGTTGCCTTGGAAATTGTCAGTGGAAGAAGCAACACTACTTATAGGCCAAAAGAAGAATCCATCTATCTTCTTGATCGGGTAATTTTGACAACATTCTTTCTTGCATTTGTCAAGCTGTAA 2610 42.87 MPSINSLLSSLLIAFAFFTTLTFSATLLPNNEVEALEEIAKTLGKTDWNFSADPCGGEWGWATKNPVKGSENAVTCSCTNNTVCHVVSIVLKTQNLPGSLPPELVKLPYLQEIDFTRNYLNGSIPPEWGTMQLVNISLIGNQLTGSIPKELGNISTLANLTVEFNQLSGVLPQELGNLPSIERILLTSNNFTGELPQTFAGLTTLKDFRVGDNQFTGKIPNFIQNWTKLEKLVIQGSGFSGPIPSGIALLTKITDLRISDLNGTEATFPPLSDMRDLKTLILRSCNIVDPLPDYLGEMTKLKTLDLSFNKLTGEIPSSFVGLSNADYMYFTGNMLTGAVPDWMLKRGDNYDLSYNNFTSESSRGCQERSVNLFGSSSGGNNSGIVSCLRSFNCPKKFYSMHINCGGKEVIVDGNTTYEDDTDSGGPSKFYQSRTNWAFSSTGHFMDDDRPTDSFIGTNVSRLIMENSGLYTTARLSALSLTYYGFCLENGNYTVKLHFAEITFTDDKTYSSLGRRLFDVYVQDKLVLKDFNIEDEAGGVSKEILKYFTAVVTNNTLEIRFYWAGKGTTGIPVRGVYGPLISAISVDPDFIPPTENGSSSISVGVVVGIVAGVILLVFLLIGILWWRDCLRRKDTLEQELKGLDLQTGLFTLRQIKAATNNFDAANKIGEGGFGSVYKGVLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLIYEYMENNSLARALFGPEECQLQLDWPTRHRICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYFGVVALEIVSGRSNTTYRPKEESIYLLDRVILTTFFLAFVKL* 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 481018 491501 - Vvi19g42 Vvi19g42 781541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g42 869 ProSiteProfiles Protein kinase domain profile. 661 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g42 869 Pfam Protein kinase domain 664 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g42 869 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 291 343 - -
Vvi19g42 869 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 377 863 - -
Vvi19g42 869 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 73 288 - -
Vvi19g42 869 Pfam Malectin domain 399 583 IPR021720 -
Vvi19g42 869 ProSitePatterns Protein kinases ATP-binding region signature. 667 689 IPR017441 GO:0005524
Vvi19g42 869 Gene3D Transferase(Phosphotransferase) domain 1 737 858 - -
Vvi19g42 869 SUPERFAMILY Protein kinase-like (PK-like) 646 856 IPR011009 -
Vvi19g42 869 SMART serkin_6 661 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g42 869 Gene3D Ribonuclease Inhibitor 224 371 IPR032675 -
Vvi19g42 869 Pfam Leucine rich repeat 276 335 IPR001611 GO:0005515
Vvi19g42 869 SUPERFAMILY L domain-like 73 342 - -
Vvi19g42 869 Gene3D - 397 587 - -
Vvi19g42 869 Gene3D Ribonuclease Inhibitor 32 154 IPR032675 -
Vvi19g42 869 Gene3D Ribonuclease Inhibitor 155 223 IPR032675 -
Vvi19g42 869 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 73 288 - -
Vvi19g42 869 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 377 863 - -
Vvi19g42 869 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 291 343 - -
Vvi19g42 869 Gene3D Phosphorylase Kinase; domain 1 627 736 - -
Vvi19g42 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g281 Vvi19g42 ECH
Vvi10g278 Vvi19g42 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76458 PF00069 Pkinase 6.50E-36 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g42 - - vvi:100255520 1650.18