Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g420 ATGGTTTCTCCAGAAGCCACCAATTGGCTGTACGAGTACGGGCTCATCGAGGACATCCCTGTCCCTGATTCAAACTTCGCTAATACGAATTCAGGGTTCGCCTGGACTCCTGTGCAGGCCTTGAACACTTCTGCTAATGTCAGTGGGGAAATTGATGGTTCATTTGGGGACTCTGACGGCATTAAGGAAACTGGATCAAAGAAGAGGGTGAGATCTGAATCATGTGGTGCATCTAGCTCGAAGGCATGTAGGGAGAAGTTGCGGAGGGACAGGCTAAATGACAAGTTTATGGAATTGGGTTCTATCCTGGAGCCTGGAAGGCCTCCAAAAACAGACAAGTCTTCTATTTTGATTGATGCAGTTCGAATGGTAACTCAGTTACGAGGTGAGTCGCAGAAGTTGAAGGACTCAAATTCTAGTCTCCAGGAGAAGATTAAAGAATTGAAGGCCGAGAAGAATGAGCTTCGTGATGAGAAGCAAAGGCTAAAGGCCGAGAAAGAGAAACTGGAGCAGCAACTGAAAGCAATGAATGCTCAACCTAGTTTCCTGCCTCCCGTTCCTTCAATCCCTGCTGCATTTGCAGCTCAAGGCCAAGCTGGCGGCAACAAGTTGGTTCCATTCATCGGCTACCCAGGAGTTGCTATGTGGCAATTCATGCCACCTGCTGCAGTTGATACCTCACAAGATCATGTGCTCCGTCCACCAGTTGCTTAA 714 48.04 MVSPEATNWLYEYGLIEDIPVPDSNFANTNSGFAWTPVQALNTSANVSGEIDGSFGDSDGIKETGSKKRVRSESCGASSSKACREKLRRDRLNDKFMELGSILEPGRPPKTDKSSILIDAVRMVTQLRGESQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKAMNAQPSFLPPVPSIPAAFAAQGQAGGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5400649 5404859 + Vvi19g420 Vvi19g420 781919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g420 237 MobiDBLite consensus disorder prediction 55 79 - -
Vvi19g420 237 PANTHER TRANSCRIPTION FACTOR ILR3 1 237 - -
Vvi19g420 237 CDD bZIP 142 174 - -
Vvi19g420 237 Gene3D arf6 gtpase in complex with a specific effector, jip4 126 180 - -
Vvi19g420 237 Pfam Helix-loop-helix DNA-binding domain 80 127 IPR011598 GO:0046983
Vvi19g420 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 152 IPR036638 GO:0046983
Vvi19g420 237 Gene3D - 66 125 IPR036638 GO:0046983
Vvi19g420 237 CDD bHLH_AtILR3_like 81 156 - -
Vvi19g420 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Vvi19g420 237 Coils Coil 124 179 - -
Vvi19g420 237 PANTHER BHLH TRANSCRIPTION FACTOR 1 237 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Vvi19g420 237 SMART finulus 82 133 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g551 Vvi19g420 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14423 PF00010 HLH 2.30E-10 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g420 - - vvi:100258884 453.366