Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g422 ATGGATAAAGAAATTGTAGTGTATTGTCATTCTTGGACAAAGGAACCCAGACCTGATTTCTGGTTGTTTGAAGTTGGTTTTCTGAGAGGAGTTTGGCTTATGGGAAGTGTGGAGCCTGTTTGTGAGTTTTGTGGGGTGGCGAGGGCAGTGGTGTACTGCAAACAGGACATGGCGGCCCTTTGCTTGCAGTGTGATGGCTTTGTGCACTCTGCAAATTTTATATCACAACGCCATGTCCGTTCCCTTCTATGTGACAAGTGCAATTCCCAGCCAGCAACAATTCAATGCCTAGAAGATGAAGCCTGTCTTTGTGAGAGCTGTGAGTGTAATGTTAATTCCTGCTTGGGCTCTGAACACAAGCACCAGCCCTTAAGCTTTTATTCGGGCAGTCCTTCCCCGGAAGAGTTCATAGAAATTTGGTCATCTTCTCCAAGCTGCAAGAGTCCAGTATCTTTGAGTACAAATTGCATCAACAGCTACTGGGAGAATAGGAACAATAGTAGAAGCTTGTTCTGGTCAGTGACATCATTGACCAACAGGATGAAGGAATTGGAAACTTTTACTAAGATGTCCTCATCACCCATGAGTCCACCTCAAGCACTGTTCTTCTCCTCGGTGCCACAACTTTTAAAGCAAGACCCCTCAGAGTCACAGAATCTTCATATTTGCAATGTTAATAATCCCTGCGAGGGGAGAATGGATGACGCAGAATTGAATTTAGAGAAGAGTGATAAGGTGTATGGCAGCTTACAGTGTTATATCAATTCTTTCGAGGATATTGGAATGAGTTGCCCATACATGGACAAAAGCTTGCCAGCTGATGAATCTAATATCAAGGCTGTGAATGATCAAGAACCTATAAACCCCTGCAGAAGCCAAAGTGTCAACCTAAATTTTCCTACTGGGCTAGTTCAATCTGGTGCCTCACTCTCCCTATCCAACATCACTGGTGAAAGCTGTGTTGCTGACTATCAAGATTGTGGATTATCGGCAGTAATTTTAAATGGGAATCCAACTTGGGATGCGAATCTGGGGACTAGTTGCTCTCAGGCAAGGGTTGAAGCCAAGAAGAGATACAATAAGAAAAAGAAAACCCGAATGTATGTATGTAATTCAACTCATTATTAA 1128 43.17 MDKEIVVYCHSWTKEPRPDFWLFEVGFLRGVWLMGSVEPVCEFCGVARAVVYCKQDMAALCLQCDGFVHSANFISQRHVRSLLCDKCNSQPATIQCLEDEACLCESCECNVNSCLGSEHKHQPLSFYSGSPSPEEFIEIWSSSPSCKSPVSLSTNCINSYWENRNNSRSLFWSVTSLTNRMKELETFTKMSSSPMSPPQALFFSSVPQLLKQDPSESQNLHICNVNNPCEGRMDDAELNLEKSDKVYGSLQCYINSFEDIGMSCPYMDKSLPADESNIKAVNDQEPINPCRSQSVNLNFPTGLVQSGASLSLSNITGESCVADYQDCGLSAVILNGNPTWDANLGTSCSQARVEAKKRYNKKKKTRMYVCNSTHY* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5406935 5410337 - Vvi19g422 Vvi19g422 781921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g422 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 38 369 - -
Vvi19g422 375 ProSiteProfiles Zinc finger B-box type profile. 79 124 IPR000315 GO:0008270
Vvi19g422 375 ProSiteProfiles Zinc finger B-box type profile. 36 83 IPR000315 GO:0008270
Vvi19g422 375 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 38 369 - -
Vvi19g422 375 SMART bboxneu5 36 83 IPR000315 GO:0008270
Vvi19g422 375 SMART bboxneu5 84 124 IPR000315 GO:0008270
Vvi19g422 375 CDD Bbox1_BBX-like 40 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g422 - - - vvi:100258828 689.108
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g541 Vvi19g422 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g422 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005548 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 40