Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g424 ATGCATGATGTAGTTCGCGATGTTGCTATTTGGATCGCATCTTCCCTGGAGGATGGATGTAAATCCCTTGCTCGATCAGGAATCAGTTTGACTGAGATTTCAAAATTTGAGTTGTCACAGTCTCTCCGGAGAATGTCTTTCATGTACAACAAATTAACAGCATTACCTGATAGAGAAATACAGTCTTGCCCAGGGGCCTCCACTTTACTTGTACAGAATAATCGCCCCCTTGAGATAGTTCCCGTGGAATTCCTGCTTGGATTTCAAGCACTCAGGGTCTTGAATCTAAGTGAAACCCGCATCCAGCGATTGCCTCTCTCCCTCATCCACCTTGGTGAACTTCGTGCCCTTTTATTAAGCAAATGTGTTAGGCTCAATGAACTACCCCCTGTGGGGCGGCTTAGTAAACTACAAGTGCTTGATTGCAGCTACACTAATATCAAGGAATTGCCAGCAGGGCTAGAGCAGCTGAGCAACTTACGGGAATTAAACTTGTCATGCACTGATGGGTTGAAAACCTTCCGAGCAGGATTGGTATCAAGGTTGTCTAGTTTAGAGATTCTAGACATGAGAGACAGTAGCTATAGATGGTGTCCGAAGACAGAGACAAACGAGGGAAAAGCAACACTTGAGGAGCTAGGATGCCTGGAGCGATTAATTGGTTTAATGGTAGACTTGACTGGCTCCACATATCCCTTTTCGGAATATGCTCCTTGGATGAAACGATTGAAAAGCTTTAGAATTATATCTGGAGTTCCGTTCATGAATAGTTTTAAGAATGATGGAAATTTTGAGGAAAGAGAGGTTCTACTTTCCAGACTGGATCTGTCAGGCAAATTGAGTGGATGGTTGTTAACATATGCGACAATTCTTGTACTGGAATCATGCAAGGGGTTAAATAATCTGTTTGATAGTGTTGGGGTCTTTGTTTATCTCAAGTCACTTTCTATTTCATCTTCCAACGTCAGGTTTAGGCCACAAGGAGGATGCTGTGCCCCAAATGACCTACTTCCAAATCTGGAGGAACTTTACCTCAGTTCTCTCTATTGCCTAGAGAGCATTTCAGAATTAGTCGGGACTCTTGGACTCAAATTCTCAAGGCTAAAAGTGATGAAGGTGCTCGTTTGTGAGAAACTAAAGTATCTTCTCTCTTGTGATGATTTTACTCAACCCTTAGAAAAGCTGGAAATAATTGATTTACAAATGTGTGAAGATTTGAATGATATGTTCATACACAGTTCAGGGCAGACCTCAATGTCATATCCTGTTGCTCCAAACTTGCGGGAAATACACTTCAAAAGGCTTCCCAAATTGAAGACTTTAAGCAGACAAGAAGAAACATGGCAACATCTAGAGCATATTTATGTGGAAGAGTGTAAAAGTCTGAAGAAGCTACCTCTGAATGAGCAAAGTGCAAATACCTTGAAAGAGATAAGAGGAGACATGGAGTGGTGGAAGCAATTGGAGTGGGATGATGACTTTACCAGCTCCACTCTCCAGCCTCTTTTCAAAGGTCCAAGCTACTACTAG 1530 42.22 MHDVVRDVAIWIASSLEDGCKSLARSGISLTEISKFELSQSLRRMSFMYNKLTALPDREIQSCPGASTLLVQNNRPLEIVPVEFLLGFQALRVLNLSETRIQRLPLSLIHLGELRALLLSKCVRLNELPPVGRLSKLQVLDCSYTNIKELPAGLEQLSNLRELNLSCTDGLKTFRAGLVSRLSSLEILDMRDSSYRWCPKTETNEGKATLEELGCLERLIGLMVDLTGSTYPFSEYAPWMKRLKSFRIISGVPFMNSFKNDGNFEEREVLLSRLDLSGKLSGWLLTYATILVLESCKGLNNLFDSVGVFVYLKSLSISSSNVRFRPQGGCCAPNDLLPNLEELYLSSLYCLESISELVGTLGLKFSRLKVMKVLVCEKLKYLLSCDDFTQPLEKLEIIDLQMCEDLNDMFIHSSGQTSMSYPVAPNLREIHFKRLPKLKTLSRQEETWQHLEHIYVEECKSLKKLPLNEQSANTLKEIRGDMEWWKQLEWDDDFTSSTLQPLFKGPSYY* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5422993 5430258 + Vvi19g424 Vvi19g424 781923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g424 509 PANTHER OS12G0491200 PROTEIN 1 496 - -
Vvi19g424 509 Gene3D Ribonuclease Inhibitor 267 490 IPR032675 -
Vvi19g424 509 Pfam Leucine Rich repeats (2 copies) 136 167 IPR025875 -
Vvi19g424 509 Pfam Leucine rich repeat 67 121 IPR001611 GO:0005515
Vvi19g424 509 PANTHER DISEASE RESISTANCE PROTEIN RP 1 496 IPR044974 GO:0006952
Vvi19g424 509 Gene3D Ribonuclease Inhibitor 12 259 IPR032675 -
Vvi19g424 509 SUPERFAMILY L domain-like 2 479 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g424 K13459 RPS2; disease resistance protein RPS2 - vvi:100247069 924.465
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g424 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018030 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6