Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g425 ATGGAAGTTGTGGCTTCAATAGTGGGTGCACTTATAGCAGAAGCTGCTCGACATCTTTGTAGCCGTGTTTATTCTACAACCAGGGGTTGCCTTGCCAGGATAGTGGCTGTGAGTTGTGCAAAACGAGCAGTGGAGCATATACCAGGGCCGTCGATCGAAGATCAAACCACAGCCTCAGGAACCTTAGAAAAAATCATGGATCTTCTGAACGATGATGGAGTTAGGAGGATTGGTATCTGGGGTATGGGAGGGGTGGGCAAGACTACTTTGGTAAGGAACTTGAACAACAAGCTCAGGAATGATCCAAACAACACTTTTGGCTTGGTCATATGGAGTACAGTGTCCAAGGAGGTGGATTTGAAAAGGATCCAAACAGAAATTGCAAAGAGATTGGGGATGGAAGTGAAAAAAGATGAAAGCATCCAGACTCTGGCTATTCAATTGCTCCAGAAACTGAGAAAGCAAGACAGGTTTCTCCTCATTCTGGATGATGTTTGGAAGGGAATCGATTTGGATGCTTTAGGCGTCCCACAGCCTGAAGATACAAAGGGTGGTAAGATCATATTGACTTGTCGACCTTTGAATGTTTGTCGAGAGATGAAGACTGATCAAGATGTTAAAGTGGATGTCTTGACTGATGATGAAGCTTGGAAATTGTTTTGTCAAAATGCAGGCATGGTAGCTGAATTAGAACATATTAAACCACTAGCAGAGGCAATTGTTCAAGAATGTGCTGGATTGCCATTGGCGATAAACATCATGGCGACATCCATGAGGGGAAAACAAATGGTTGAGCTCTGGAAGGATGCCTTGAATGAGCTGCAAAAGTCTGTGCCGAGTAATATTGAAGGGGTTGAGGATAAGGTTTATCGGACCTTGAAATGGAGTTATGACTCACTACAAGGTATGAACATCAAATATTGTTTCCTGTATTGTTCTTTATTTCCTGAGGATTTCTCAATTGAAATAAGTCATCTTGTGCAATATTGGATGGCGGAAGGCTTGATAGATGAAGATCAAAGCTATGAAGTTATGTACAATAGAGGATTTGCTTTGGTTGAGAATTTGAAGGACTGCTGTTTGTTGGAACATGGTAGCCGAAAGGACACCACTGTGAAAATGCATGATGTTGTTCGGGATGTTGCTATATGGATTGCATCCTCCCTGGAGGATGAATGTAAATCCCTTGTTCAATCAGGAATTGGGTTGAGCAAAATCTCAGAGTACAAATTTACGAGGTCTCTCAAGAGAATTTCTTTCATGAATAACCAAATATCATGGCTGCCTGACTGTGGGATAAACTGCCCAGAGGCATCAGCTTTACTTCTGCAAGGTAATACTCCCCTTGAAAAAGTTCCAGAAGGATTCCTACGAGGCTTTCCAGCACTCAAAGTCTTGAATCTATCTGGAACCCGCATCCAGAGGTTGCCACTTTCCCTTGTCCATCTTGGTGAACTTCGTGCTCTCCTTTTAAGGAATTGCAGTTTTCTTGAAGAATTACCCCCTGTAGGAGGGCTTAGTAGACTTCAAGTGCTTGACTGTGCCTCTACTAACATCAAGGAATTACCTGAAGGGATGGAGCAATTGAGCTACTTAAGGGAGTTGCATCTATCAAGAACCAAGCAGTTGACAACCATTCAAGCTGGAGTCCTCTCTGGGTTGTCTAGTTTAGAGGTTCTAGACATGAGAGGAGGTAACTACAAGTGGGGTATGAAAGGAAAGGCAAAACATGGACAAGCAGAATTTGAGGAGCTAGCAAATCTCGGGCAGTTAACTGGTTTGTACATTAATGTGCAGAGCACCAAATGTCCTTCTTTGGAGAGTATTGACTGGATAAAAAGACTGAAAAGCTTCAAAATATGTGTTGGTTTAAGTATCTGTGATGTATATGAACATGGGCATTTTGATGAAAGAATGATGTCTTTTGGTCATCTCGATCTATCGAGGGAATTTCTTGGGTGGTGGTTAACTAATGCAAGTTCTCTGTTCTTGGATTCCTGCAGGGGCCTAAATCTGATGCTTGAAACCTTAGCCATCAGCAAGGTTGATTGCTTTGCTAGTTTAAAGAAACTTACTATTATGCATTCTGCTACCAGCTTTCGGCCAGCAGGAGGATGTGGTTCCCAATATGACCTACTTCCAAATCTAGAAGAACTTTACCTTCATGATCTCACTTTTCTGGAGAGTATTTCAGAATTAGTTGGTCATCTTGGACTTAGATTCTCAAGGCTGAGAGTGATGGAGGTGACCTTGTGTCCCAGCTTAAAGTATCTGTTAGCTTATGGTGGTTTCATTCTGAGCTTAGACAACCTGGATGAAGTCAGCTTAAGCCATTGTGAGGACCTGAGTGATCTCTTCCTATACAGTTCAGGGGACACCTCAATTTCAGATCCTGTTGTTCCAAACTTACGGGTGATAGACTTGCATGGCCTTCCCAATCTGAGGACCTTTTGCAGACAAGAAGAGTCATGGCCCCATCTGGAGCATCTTCAAGTGTCTCGGTGTGGTCTTCTCAAGAAGCTACCTCTCAATAGGCAAAGTGCAACCACAATAAAGGAAATAAGAGGAGAACAAGAGTGGTGGAACCAATTGGACTGCCTCTTAGCCAGATATGCGTTCAAAGATATCAACTTTGCTTCCACAAGATATCCCCTCATGCATCGATTGTGTTTAACCTTAAAGAGCCTGGAAGACCTCAAGGTCTCGTCCTGTCCCAAGGTAGAGTTAAACCTCTTCAAATGCAGCCAAGGATCGAACTCAGTTGCCAATCCGACTGTTCCAGGCCTACAGAGAATAAAGTTGACAAACCTTCCCAAATTAAAGAGTTTAAGCAGACAACGGGAGACATGGCCGCATCAAGCTTATGTTGAAGTGATAGGATGTGGTAGCCACAAGACATTACCTCTCAGTAAGAGAAGTGCAGATGCCACGAAAGAAATAGTAGGCGAATTGGAGCGGTGCAACCAATTGGAGTGGGATAGTATTGATATCGAGTCCAAACTCCAGCCCTTTTCTAAAGACCAGAGGCCACGCTGA 3036 43.25 MEVVASIVGALIAEAARHLCSRVYSTTRGCLARIVAVSCAKRAVEHIPGPSIEDQTTASGTLEKIMDLLNDDGVRRIGIWGMGGVGKTTLVRNLNNKLRNDPNNTFGLVIWSTVSKEVDLKRIQTEIAKRLGMEVKKDESIQTLAIQLLQKLRKQDRFLLILDDVWKGIDLDALGVPQPEDTKGGKIILTCRPLNVCREMKTDQDVKVDVLTDDEAWKLFCQNAGMVAELEHIKPLAEAIVQECAGLPLAINIMATSMRGKQMVELWKDALNELQKSVPSNIEGVEDKVYRTLKWSYDSLQGMNIKYCFLYCSLFPEDFSIEISHLVQYWMAEGLIDEDQSYEVMYNRGFALVENLKDCCLLEHGSRKDTTVKMHDVVRDVAIWIASSLEDECKSLVQSGIGLSKISEYKFTRSLKRISFMNNQISWLPDCGINCPEASALLLQGNTPLEKVPEGFLRGFPALKVLNLSGTRIQRLPLSLVHLGELRALLLRNCSFLEELPPVGGLSRLQVLDCASTNIKELPEGMEQLSYLRELHLSRTKQLTTIQAGVLSGLSSLEVLDMRGGNYKWGMKGKAKHGQAEFEELANLGQLTGLYINVQSTKCPSLESIDWIKRLKSFKICVGLSICDVYEHGHFDERMMSFGHLDLSREFLGWWLTNASSLFLDSCRGLNLMLETLAISKVDCFASLKKLTIMHSATSFRPAGGCGSQYDLLPNLEELYLHDLTFLESISELVGHLGLRFSRLRVMEVTLCPSLKYLLAYGGFILSLDNLDEVSLSHCEDLSDLFLYSSGDTSISDPVVPNLRVIDLHGLPNLRTFCRQEESWPHLEHLQVSRCGLLKKLPLNRQSATTIKEIRGEQEWWNQLDCLLARYAFKDINFASTRYPLMHRLCLTLKSLEDLKVSSCPKVELNLFKCSQGSNSVANPTVPGLQRIKLTNLPKLKSLSRQRETWPHQAYVEVIGCGSHKTLPLSKRSADATKEIVGELERCNQLEWDSIDIESKLQPFSKDQRPR* 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5430840 5434734 - Vvi19g425 Vvi19g425 781924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g425 1011 SUPERFAMILY L domain-like 373 846 - -
Vvi19g425 1011 Gene3D Ribonuclease Inhibitor 382 697 IPR032675 -
Vvi19g425 1011 Pfam Leucine rich repeat 440 495 IPR001611 GO:0005515
Vvi19g425 1011 Pfam Leucine rich repeat 508 564 IPR001611 GO:0005515
Vvi19g425 1011 PRINTS Disease resistance protein signature 76 91 - -
Vvi19g425 1011 PRINTS Disease resistance protein signature 152 166 - -
Vvi19g425 1011 PRINTS Disease resistance protein signature 244 258 - -
Vvi19g425 1011 PRINTS Disease resistance protein signature 766 782 - -
Vvi19g425 1011 Gene3D - 297 381 IPR036388 -
Vvi19g425 1011 Gene3D Ribonuclease Inhibitor 765 865 IPR032675 -
Vvi19g425 1011 Gene3D - 40 208 IPR027417 -
Vvi19g425 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 312 IPR027417 -
Vvi19g425 1011 PANTHER OS12G0491200 PROTEIN 892 996 - -
Vvi19g425 1011 PANTHER OS12G0491200 PROTEIN 46 864 - -
Vvi19g425 1011 Gene3D - 210 296 IPR042197 -
Vvi19g425 1011 PANTHER DISEASE RESISTANCE PROTEIN RP 892 996 IPR044974 GO:0006952
Vvi19g425 1011 PANTHER DISEASE RESISTANCE PROTEIN RP 46 864 IPR044974 GO:0006952
Vvi19g425 1011 Pfam NB-ARC domain 61 298 IPR002182 GO:0043531
Vvi19g425 1011 SMART AAA_5 73 212 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g425 K13459 RPS2; disease resistance protein RPS2 - vvi:100252193 1722.21
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g425 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018030 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6