Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g426 ATGACTTCTGTTTTGGGTTCAGTGGTAGCTGAAATTTCTCGATTTTTTTGTGGCTTTATCTGGTCGGAAACTAAGAATTCCGTCAGATTCAAATCAAACTTCAATGACTTGGAAAAGAAGTTAGAGCTTTTAAAAGATGTTCGATACAAGATGGAGAATGAACTTGATGATTCAGTTTCAATGCCCAAAGTAACTGGGTGGCTTACAGAGGTTGAAGGGATCCAGGATGAAGTGAATTCTGTTCTACAAAGTATAGCAGCCAACAACAAGAAGCGTTGTGGTGGTTTCTTTAGTTGCTGTCAATGGAGCAGGGAACTCGCTAAAACACTCGAGAAGGTACAGATGCTTCAGAAAGAGGGCAATTCCATCATTTCTATGGCTGCTGCCAACCGAAAAGCCCATGCAGTGGAGCACATGCCTGGACCATCAGTCGAAAATCAGTCGACAGCATCACAAAATCTAGCCAGAATCATGGATCTGCTGAATGATGATGGAGTCAAGAGTATTGGTGTCTGGGGTATGGGGGGTGTGGGCAAAACTACCCTGGTAAAGAACTTGAACAACAAGCTCGAGAATGCTTCTTCTGCACAACCTTTTGGGGTTGTCATATGGGTCACTGTGTCCAAGGATTTGGACTTGAGAAGGATCCAAATGCAAATAGCTCACAGATTGAATGTGGAAGTGAAAATGGAAGAAAGCACAGAGAGTTTGGCTGTTAAATTGTTCAGGAGACTGAAGAGGACAGGCAAGTTTCTTCTCATTCTGGATGATGTTTGGAAGGGAATTGATTTGGACGCTTTGGGTGTCCCAAGGCCTGAAGTTCATACGGGTTGTAAGATCATAATAACAACTCGGTTTTTAGATGTTTGCAGGCAGATGAAGATAGATAAAAGAGTAAAAGTGCAGATCTTGAATTATGATGAGGCCTGGGAATTGTTTTGTCAAAATGCAGGTGAGGTAGCCACCTTAAAGCCTATAAAACCGTTAGCGGAGACCGTTACGAAAAAATGTGACGGATTGCCTTTGGCCATAATCATCATGGCCACATCTATGAGGGGGAAGAAGAAGGTTGAGCTTTGGAAGGATGCTTTGAATGAGCTACAAAATTCACAGCCAGAAAATATCCCGGGGATCGAGGATCAGGTTTATAGAGTCCTAAAGTGGAGTTACGATTCATTGCAGGGTAAGAACATGAAATCTTGCTTCCTATTTTGCTCCCTGTTTCCTGAGGATTTTTCGATTGATATAAGTGAACTGACGAAATACTGGCTAGCGGAAGGCTTAATAGATGAACACCAAACCTATGACAATATCCACAACAGAGGATTTGCGGTAGCTGAATATCTCAAGGACTGCTGTTTGTTGGAAGATGGTGACCCCAAAGAAACCACCGTGAAGATGCATGATGTGGTTCGTGATGTTGCGATATGGATTGCGTCTTCGTTGGAGCATGGATGCAAATCCCTAGTGCGCTCAGGAATCAGATTGCGTAAGGTATCAGAGTCTGAAATGTTGAAGCTTGTAAAGAGAATTTCTTACATGAATAATGAAATTGAAAGGCTGCCTGATTGTCCAATATCTTGCTCAGAGGCAACTACTTTACTTCTACAAGGTAATTCCCCCCTTGAGAGAGTTCCTGAGGGCTTCCTACTAGGCTTTCCAGCACTAAGGGTACTCAATCTGGGTGAAACCAAGATCCAAAGATTGCCTCATTCCCTTCTCCAGCAGGGGCTTAGAAGACTACAAGTGCTTGATTGCAGTTGTACTGACCTCAAGGAATTACCAGAAGGGATGGAGCAGCTGAGCTGCTTAAGGGTTTTGAATCTATCATACACAAAGCAGTTGCAAACCTTTGCAGCCAGACTAGTGTCTGGGTTGTCTGGTCTGGAGGTTCTAGAAATGATAGGTAGCAACTACAACTGGTTCGGAAGATTGAAAAGCTTCGAATTTTCTGTGGGCTCATTGACTCATGGTGGGGAAGGCACAAACCTTGAGGAAAGGTTGGTCATTATTGATAATCTTGATCTCTCAGGAGAATGGATTGGGTGGATGTTATCTGATGCAATTTCTCTATGGTTTCATCAATGCAGCGGACTAAATAAGATGCTTGAAAACTTAGCGACAAGGAGCTCTGGTTGCTTTGCTAGTTTGAAGTCTCTTTCAATTATGTTTTCCCACTCCATGTTTATACTAACAGGAGGATCATATGGTGGCCAATATGATCTACTGCCAAATCTAGAAAAACTTCATCTCTCCAATCTCTTTAATCTTGAGAGCATTTCAGAATTAGGTGTTCATCTTGGACTCAGATTCTCAAGACTGAGGCAATTGGAAGTGTTGGGTTGTCCCAAAATAAAATACCTTCTGTCTTATGATGGTGTCGATCTATTCTTGGAAAACCTAGAAGAAATCAAGGTAGAATACTGCGACAATTTGAGGGGTCTATTTATACACAATTCTAGGAGGGCATCATCGATGCCCACTACTCTGGGTTCTGTTGTTCCAAACTTGAGGAAAGTACAGTTGGGATGTCTTCCTCAATTGACGACTCTAAGCAGAGAAGAAGAGACATGGCCACATCTAGAGCATCTGATAGTGAGAGAGTGCGGAAATTTGAATAAGCTCCCTCTGAATGTCCAAAGTGCAAACAGCATAAAAGAAATAAGAGGAGAACTGATATGGTGGGACACATTAGAGTGGGACAACCACGAAACCTGGTCTACTCTCCGGCCTTTTGTCCGGGCCATGGCCTCTCATCCAGGCCAACTGTGA 2772 42.93 MTSVLGSVVAEISRFFCGFIWSETKNSVRFKSNFNDLEKKLELLKDVRYKMENELDDSVSMPKVTGWLTEVEGIQDEVNSVLQSIAANNKKRCGGFFSCCQWSRELAKTLEKVQMLQKEGNSIISMAAANRKAHAVEHMPGPSVENQSTASQNLARIMDLLNDDGVKSIGVWGMGGVGKTTLVKNLNNKLENASSAQPFGVVIWVTVSKDLDLRRIQMQIAHRLNVEVKMEESTESLAVKLFRRLKRTGKFLLILDDVWKGIDLDALGVPRPEVHTGCKIIITTRFLDVCRQMKIDKRVKVQILNYDEAWELFCQNAGEVATLKPIKPLAETVTKKCDGLPLAIIIMATSMRGKKKVELWKDALNELQNSQPENIPGIEDQVYRVLKWSYDSLQGKNMKSCFLFCSLFPEDFSIDISELTKYWLAEGLIDEHQTYDNIHNRGFAVAEYLKDCCLLEDGDPKETTVKMHDVVRDVAIWIASSLEHGCKSLVRSGIRLRKVSESEMLKLVKRISYMNNEIERLPDCPISCSEATTLLLQGNSPLERVPEGFLLGFPALRVLNLGETKIQRLPHSLLQQGLRRLQVLDCSCTDLKELPEGMEQLSCLRVLNLSYTKQLQTFAARLVSGLSGLEVLEMIGSNYNWFGRLKSFEFSVGSLTHGGEGTNLEERLVIIDNLDLSGEWIGWMLSDAISLWFHQCSGLNKMLENLATRSSGCFASLKSLSIMFSHSMFILTGGSYGGQYDLLPNLEKLHLSNLFNLESISELGVHLGLRFSRLRQLEVLGCPKIKYLLSYDGVDLFLENLEEIKVEYCDNLRGLFIHNSRRASSMPTTLGSVVPNLRKVQLGCLPQLTTLSREEETWPHLEHLIVRECGNLNKLPLNVQSANSIKEIRGELIWWDTLEWDNHETWSTLRPFVRAMASHPGQL* 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5439379 5442644 + Vvi19g426 Vvi19g426 781925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g426 923 PANTHER OS12G0491200 PROTEIN 14 906 - -
Vvi19g426 923 Gene3D - 125 300 IPR027417 -
Vvi19g426 923 Gene3D - 303 389 IPR042197 -
Vvi19g426 923 Gene3D Ribonuclease Inhibitor 487 657 IPR032675 -
Vvi19g426 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 405 IPR027417 -
Vvi19g426 923 SMART AAA_5 165 305 IPR003593 -
Vvi19g426 923 PRINTS Disease resistance protein signature 245 259 - -
Vvi19g426 923 PRINTS Disease resistance protein signature 599 615 - -
Vvi19g426 923 PRINTS Disease resistance protein signature 337 351 - -
Vvi19g426 923 PRINTS Disease resistance protein signature 168 183 - -
Vvi19g426 923 Pfam NB-ARC domain 154 391 IPR002182 GO:0043531
Vvi19g426 923 Gene3D Ribonuclease Inhibitor 662 893 IPR032675 -
Vvi19g426 923 Gene3D - 390 476 IPR036388 -
Vvi19g426 923 PANTHER DISEASE RESISTANCE PROTEIN RP 14 906 IPR044974 GO:0006952
Vvi19g426 923 Coils Coil 34 54 - -
Vvi19g426 923 SUPERFAMILY L domain-like 460 886 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g426 K13459 RPS2; disease resistance protein RPS2 - vvi:100257323 1803.1
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018030 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6