Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g428 ATGGAATGTGTGATTGCATGCCTGAGTTCAGCAGTATCATCGTTTTCTGAACATCTTTGTGGCTTGATCTGCTCCAAAGTTGGGAATCCCTTCACCTTCAAGTCTAATTATAGTCATCTGCAACAGGAGCTGCAACGTCTAAACGATCTGAAATCCACAGTGGAAAGGGACCACGATGAATCGGTTCCAGGAGTAAATGACTGGTGGAGAAATGTTGAAGAAACTGGCTGTAAAGTGAGACCGATGCAAGCAAAGATAGAAGCCAACAAAGAGAGGTGTTGTGGTGGCTTCAAAAATCTCTTTCTGCAAAGCAGGGAAGTGGCAGAGGCACTGAAGGAGGTGCGAGGACTTGAGGTACGTGGAAATTGCCTTGCCAATTTGCTGGCTGCCAATCGTGAAGCAACAGCAGTGGAGCATATGCCTGTGGAATCAATTGTTCATCAACCCGCAGCATCCAAAAATTTAGCCACAATTATGAATCTGCTGAATGACGATACAGTTAGAATAATTGGGGTTTGGGGTCTGGGAGGAATAGGCAAAACTACTCCAGTTAAGAATTTGAACAACATGCTTAAGGATGCCTCTTCAACTACTCCACCTTTTAGCATTGTCATATGGATCACCCTGTCCAGGGAGTGGGACCACAAAAGCATCCAGGCACAAATTGCTCGGAGATTGAATATGAAGGTGAATACCGAAGACAGCACTGAGAGTCTGGCTGCCAGATTGTGTGAAAGACTGAAGAGGGAAGAAAAGTTTCTCCTCCTTCTAGATGATGTTTGGAAGGAAATTGATTTGGATGATTTGGGTATTCCCCGACCTGAAGACCACGTGGCTTGTAAAATCATATTGACAACCAGATTTTTAAATGTTTGCCGAGGGATGAAAACAGACAGAGAGATTCCCATTCATGTCCTAAACGATGATGAAGCTTGGAAATTGTTCTGTAAAAATGCAGGGGAGGCAGCCATTTTAGAAGACGTTGAACCAGTTGCGAGGGCAATAACTAAGGAGTGTGGAGGATTGCCCTTGGCAATAAATATGATGGGAACATCCATGAGAAAGAAGACTAGCAAACACCAGTGGGAGCATGCATTGAAGGAGCTGCAAAGGTCAGTGCCGCATAACATCTACGGGGTAGAGGATAGGGTTTACAAGCCTTTAAAGTGGAGTTATGATTCCTTGCAAGGTAACATCCAATCTTGCTTTTTGTATTGCTCTTTATATCCTGAGGATTTCTCAATTAAAATAAGTGAACTTGTACAATGCTGGCTGGGGGAAGGCCTTTTAGATGTAGATGAACAACAAAGCTATGAGGATATCTACAATAGTGGAGTTGCTTTAGTTGAAAATCTCAAGGATTGTTGTTTGCTGGAAAATGATGATGATGACAAAAGCGGCACTGTGAAGATGCATGATCTAGTTCGTGATGTCGCGATTTGGATTGCATCCTCCTCAGAGGATGAATGTAAATCTCTTGCCTCCACTTTGATTTTACAAAATAATAACAAACTTAAGATAGTTCCTGAGGCATTCCTGCTCGGATTTCAAGCACTCAGGGTCTTGAATCTAAGTAATACCAACATCCAGCGATTGCCTCTTTCCCTCATCCACCTTGGTGAACTTCGTGCCCTTTTATTAAGCCAATGTGGTAGGCTCAATGAATTACCCCCTGTGGGGCGGCTTAGTAAACTACAAGTGCTGGATTGCAGTAATAGTGGTATCCTGAAATTGCCAGAAGGGATGGAGCAGTTGAGCAACTTACGGGAATTAAACTTGTCAGGCACTTGGGGGTTGAAAACCTACGGAGCTGGATTGGTATCAAGGCTGTCTGGTTTAGAGATTCTGGACATGAGTGAGAGTAACTGTAGATGGTGTCTGAAGACAGAGACAAACGAGGGAAACGCAGCACTACTTGAGGAGCTAGGATGGCAGACCTCAATGCCATATCCCGTTGCTCCAAACTTGCAGAAAATAGCGTTATCATTGCTTCCCAACTTGAAGACTTTAAGCAGACAAGAAGAAACATGGCAACATCTAGAGCATATTTATGTGAGAGAGTGTAGAAATCTGAAGAAGCTACCTTTGAATGAGCAAAGTGCAAATACTTTGAAAGAGATAAGAGGAGAGGAGGAGTGGTGGAAGCAATTGGAGTGGGATGATGATGTTACCAGCTCCACTCTCCAGCCACTTTTCAAAGTTCCAGCTTTCTGA 2214 43.59 MECVIACLSSAVSSFSEHLCGLICSKVGNPFTFKSNYSHLQQELQRLNDLKSTVERDHDESVPGVNDWWRNVEETGCKVRPMQAKIEANKERCCGGFKNLFLQSREVAEALKEVRGLEVRGNCLANLLAANREATAVEHMPVESIVHQPAASKNLATIMNLLNDDTVRIIGVWGLGGIGKTTPVKNLNNMLKDASSTTPPFSIVIWITLSREWDHKSIQAQIARRLNMKVNTEDSTESLAARLCERLKREEKFLLLLDDVWKEIDLDDLGIPRPEDHVACKIILTTRFLNVCRGMKTDREIPIHVLNDDEAWKLFCKNAGEAAILEDVEPVARAITKECGGLPLAINMMGTSMRKKTSKHQWEHALKELQRSVPHNIYGVEDRVYKPLKWSYDSLQGNIQSCFLYCSLYPEDFSIKISELVQCWLGEGLLDVDEQQSYEDIYNSGVALVENLKDCCLLENDDDDKSGTVKMHDLVRDVAIWIASSSEDECKSLASTLILQNNNKLKIVPEAFLLGFQALRVLNLSNTNIQRLPLSLIHLGELRALLLSQCGRLNELPPVGRLSKLQVLDCSNSGILKLPEGMEQLSNLRELNLSGTWGLKTYGAGLVSRLSGLEILDMSESNCRWCLKTETNEGNAALLEELGWQTSMPYPVAPNLQKIALSLLPNLKTLSRQEETWQHLEHIYVRECRNLKKLPLNEQSANTLKEIRGEEEWWKQLEWDDDVTSSTLQPLFKVPAF* 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5477936 5482499 + Vvi19g428 Vvi19g428 781927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g428 737 PANTHER DISEASE RESISTANCE PROTEIN RP 638 725 IPR044974 GO:0006952
Vvi19g428 737 PANTHER DISEASE RESISTANCE PROTEIN RP 491 624 IPR044974 GO:0006952
Vvi19g428 737 PANTHER DISEASE RESISTANCE PROTEIN RP 17 494 IPR044974 GO:0006952
Vvi19g428 737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 406 IPR027417 -
Vvi19g428 737 Pfam Leucine rich repeat 496 550 IPR001611 GO:0005515
Vvi19g428 737 Gene3D - 392 480 IPR036388 -
Vvi19g428 737 PRINTS Disease resistance protein signature 169 184 - -
Vvi19g428 737 PRINTS Disease resistance protein signature 247 261 - -
Vvi19g428 737 PRINTS Disease resistance protein signature 339 353 - -
Vvi19g428 737 PRINTS Disease resistance protein signature 560 576 - -
Vvi19g428 737 PANTHER OS12G0491200 PROTEIN 491 624 - -
Vvi19g428 737 PANTHER OS12G0491200 PROTEIN 17 494 - -
Vvi19g428 737 PANTHER OS12G0491200 PROTEIN 638 725 - -
Vvi19g428 737 Gene3D Ribonuclease Inhibitor 482 726 IPR032675 -
Vvi19g428 737 Gene3D - 305 391 IPR042197 -
Vvi19g428 737 Coils Coil 37 60 - -
Vvi19g428 737 SUPERFAMILY L domain-like 466 706 - -
Vvi19g428 737 Pfam NB-ARC domain 160 393 IPR002182 GO:0043531
Vvi19g428 737 Gene3D - 130 301 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g428 K13459 RPS2; disease resistance protein RPS2 - vvi:100260669 1258.05
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g145 Vvi19g428 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g428 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018030 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6