Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g43 ATGGAGAATAACAGCCTCGCTCGTGCTTTGTTTGGCCCCGAAGAATGTCAATTACAATTGGATTGGCCAACTAGGCACAGGATCTGTGTTGGCATAGCAAGAGTGTTGGCTTATCTTCATGAAGAATCAAGGCTGAAGATCATCCACCTAGACATCAAGGCCACAAATGTGCTGCTTGATAAGAATCTTAACCCCAAAATATCTGACTTTGGTTTGGCCAAACTTGATGAAGAGGATAACACCCACATTAGCACCCGGAATGCTGGTGCATTTTTTGGAATTGTTGCCTTGGAAATTGTCAGTGGAAGAAGAAACACTACTTATAGGCCAAAAGAGGAATGCATCTATCTTCTTGATTGGGCACTCTCATTAAAAGGGGAGGGGAATTTGATGGATCTAGTTGACCCCAGATTGGGCTCAGACTTCAACAAGGAAGAGGTCTTGGCGATGATCAACATAGCTCTCTTGAGCACAAAGGTCTCTCCAGCAGTCAGGCCAGCTATGTCATCAGTTGTGAGCATGCTTGAAGGCAGAACCACTGTTCAGGACATTGTTTCTGATCCCAGTGTTCCTAGTGATGACTTAAAGCTCGAGGAGATGAAGGAGCATTATTACTACACCCAAGAAAAGATCATGGGTGTGAGCGAGAGCATGCCAGACAGGCCATGGACTGCTTCTTTATCCATCCCTGATCTCTACCCAGTCACCTTGGATTTTGAATATTGGGAGAACAGAGATTAA 741 44.8 MENNSLARALFGPEECQLQLDWPTRHRICVGIARVLAYLHEESRLKIIHLDIKATNVLLDKNLNPKISDFGLAKLDEEDNTHISTRNAGAFFGIVALEIVSGRRNTTYRPKEECIYLLDWALSLKGEGNLMDLVDPRLGSDFNKEEVLAMINIALLSTKVSPAVRPAMSSVVSMLEGRTTVQDIVSDPSVPSDDLKLEEMKEHYYYTQEKIMGVSESMPDRPWTASLSIPDLYPVTLDFEYWENRD* 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 494246 496540 - Vvi19g43 Vvi19g43 781542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g43 246 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 90 - -
Vvi19g43 246 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 92 198 - -
Vvi19g43 246 Gene3D Transferase(Phosphotransferase) domain 1 92 189 - -
Vvi19g43 246 ProSiteProfiles Protein kinase domain profile. 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g43 246 SUPERFAMILY Protein kinase-like (PK-like) 1 192 IPR011009 -
Vvi19g43 246 Gene3D Transferase(Phosphotransferase) domain 1 1 91 - -
Vvi19g43 246 Pfam Protein kinase domain 24 81 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g43 246 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Vvi19g43 246 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 90 - -
Vvi19g43 246 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 92 198 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g276 Vvi19g43 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76459 PF00069 Pkinase 4.00E-12 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g43 - - vvi:100265805 402.519