Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g430 ATGAGGAATAATGATGGCCCTAAGCCTCATTCGGGTCGGACCAACGGGTTCATTCCCACTTCGTTTCGGGCGATTTCGGGTTATTTGAGGATCGTGTCGTCCGGTGCTTCCACTGTTGCGTCGACGGTGCGTTCGGCAGCGTCTTCAATTGTGGATAGAGATGATGATGCCAGCCATGATCAGGTGCAATGGGCTGGGTTTGACAAGTTAGAATGTGATGGAAACATCAATCGGCAAGTTCTCTTGCTTGGATATCGATCTGGATTCCAGGTCTGGGATGTTGAAGAAGCAGATAATGTGCGTGATCTAGTGTCCAGACATGATGGTCCTGTTTCATTTTTGCAAATGCTACCAAACCCAGTTGCATCAAAGGGATCCAAAGACAAGTTTGCAGACAGCCGCCCATTACTGGTAGTTTGTTCAGATGGATCTCTTTCTGGAGGTGGTAACATACAGGATGGATTTGGCACTCCTTACAAGGAGGGCATCCCAAATAGCCATGATACAGTGAATGGCAGTGCTATGCCTACTGTAGTTCGTTTTTATTCCTTGAAATCTCAGTCTTTCGTGCATTTTCTGAAGTTCAGGTCAGTAGTTTATTCTGTAAGATGCAGCTCCCGAGTGGTTGCTATTTCTCAAGCAGCTCAGATACACTGTTTTGATGTTGCAACATTGGAGAGGGAATATACTATTCTCACAAATCCGATAGTAACTGGTTCTCTTAGCTCAGGGAGTATAGGCTATGGACCTCTTGCAGTGGGTCCCAGGTGGCTGGCTTATAGTGGCAGTCCTGTTGTAGTCTCAAATTATGGGCGCGTTAGTCCTCAACATTTAACAACTTCTGGAAGTTTCTCTGGTTCTGCTTCAAATGGGAGTCTGGTTGCACACTATGCGAAAGAATCGAGCAAGCAACTTGCAGCTGGAATTGTGTCCTTAGGAGACATTGGATATAAGAAGCTGTCCAGATACTGCTCTGAGCTCCTACCTGATTCCAATAATTTGCCACATTCTGGGAGTCCTGGTCCTGGGTGGAAGGGAAATGGAGCTGTCAATGCCCATTTTCCAGATGCAGACAATGTTGGAATGGTTATTGTGAGAGATATTATCGCTAAATCTGTTATTACTCAGTTTAAAGCACATAAAAGTCCTATTTCAGCATTATGCTTTGATCCTAGTGGGACCCTTTTGGTGACAGCCTCGGTTCAAGGTCACAACATAAATGTCTTCCGAATAATGCCCGGGGTAGCTGGAAGTTCATCTGGATCAGATACTTGTGCATCTTATGCACATCTTTACAGGCTGCAACGAGGTTTCACAAATGCAGTCATACAGGACATCAGTTTCAGTGATGACAGCAATTGGATTATGATAAGCTCCTCAAGGGGGACAAGCCATCTATTTGCTATATCCCCTTCAGGAGGATCATCAACAAAACTTTTGTGCATCTGGTCCCCCGGTTACTCTTTCTGTTGTTAG 1476 45.19 MRNNDGPKPHSGRTNGFIPTSFRAISGYLRIVSSGASTVASTVRSAASSIVDRDDDASHDQVQWAGFDKLECDGNINRQVLLLGYRSGFQVWDVEEADNVRDLVSRHDGPVSFLQMLPNPVASKGSKDKFADSRPLLVVCSDGSLSGGGNIQDGFGTPYKEGIPNSHDTVNGSAMPTVVRFYSLKSQSFVHFLKFRSVVYSVRCSSRVVAISQAAQIHCFDVATLEREYTILTNPIVTGSLSSGSIGYGPLAVGPRWLAYSGSPVVVSNYGRVSPQHLTTSGSFSGSASNGSLVAHYAKESSKQLAAGIVSLGDIGYKKLSRYCSELLPDSNNLPHSGSPGPGWKGNGAVNAHFPDADNVGMVIVRDIIAKSVITQFKAHKSPISALCFDPSGTLLVTASVQGHNINVFRIMPGVAGSSSGSDTCASYAHLYRLQRGFTNAVIQDISFSDDSNWIMISSSRGTSHLFAISPSGGSSTKLLCIWSPGYSFCC* 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5486470 5495533 - Vvi19g430 Vvi19g430 781929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g430 491 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 1 475 - -
Vvi19g430 491 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 1 475 IPR045142 GO:0006914
Vvi19g430 491 SMART WD40_4 370 410 IPR001680 GO:0005515
Vvi19g430 491 SMART WD40_4 427 468 IPR001680 GO:0005515
Vvi19g430 491 Gene3D - 62 485 IPR015943 GO:0005515
Vvi19g430 491 SUPERFAMILY WD40 repeat-like 77 470 IPR036322 GO:0005515
Vvi19g430 491 Pfam WD domain, G-beta repeat 374 403 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g430 - - - vvi:100265881 923.309
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g430 Blo03g00582 Blo03g01436 . . . . . . . . . Cma09g00926 . Car09g00841 . Cpe06g00745 . . . . . . . . . . . . . . . Cone6ag0088 Cone9ag0103 . . . . . . . . . . Bpe11g00525 . . . . . . . . . Car16g00563 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005697 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39