Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g434 ATGATAGAAGAATTCCATTTTTTCCATGGAGTTATTACAGACGAGAATTCTAGATCACTTTCAAGGTTAGGTTATTATGAGATGCTGCTCTGGGTAAGAGTTAATAATGAAGAAAAGATTCAGGAGCTCTGTAATGGCATTGCAGCTGATGATGGTGCAGACAAACCCAATTTAACAGAAAATTATGTCTTAGCACTTTGTGAAAGTGGCCGGAAGGAGGAGCTTTTGAAAGTGTTAGAAATTATAGACATAACGAAAGTTTCATCAGTGGACTATGTGGCAAGTATCTTTAAATCTTTGGGGAGGCTGTCTCTGGCGTCCTTTATGGAGAAGTTTGTTTCGGCATTCAAAGCTTGCGGTACACTCATGATCATGTATTATGGAGCAGAAGAGATCTCAGATTTCATCTTTTATTATGCTAGTAATATGCCAAATTTAGCGGTTGAAGATGTTATTTTAAAATTCAAAGACTTGCATGCGCAACTGGTTGTGACACCTTCATCCACGTCATATAATAAGCTTGTTACATATTGTTGCGATTCCTTCAAGGTGCATGCAGCTCTTGATATAGTTGACCAAATGTGTGAAGCAGGTTTAACCTTATCAATAGAGATGTTCCATTCTATACTACGTGCAAGTGAGGAGAGCTTTGAGTTTAACTTGGTCCATCGAATCTATTCAGTGATCTGTCATCAGAGCTTGGAGCCAAATTGTGAAACCTTCAGAATCATGATAAATTTGCATGTGAAAATGAAAGATTTTGATGGTGCATATGACCTTCTCAAAGATATGAAGAAAATAAATTTGACACCTACAGCTGGCATTTACAATGCAATAATGGGCGGGTACTTTCGGGAGAAAAACATTTATGGTGGTTTAATGGTCCTGAAGCAAATGGGAGATGCAGATGTAAAACCAGATTCTCAGACCTTCTGCTATCTACTAAACAACTGTGAATGTGAGGAGGATATTATTAAGTATTATGAAAAATTGAAGTGTGCTGGAGTTCAAGTGACGAAGCATGTTTTCATGGCACTTATAAATGCATATGCAAGTTGTGGACAGTTTGAGAAGGCAAAACAGGTAGTCTTGGATAAAGGAGTGCCAATTAAGAGCTTGAATGAAATTAAAAGTGTGCTTGTCTCAGCTCTTGCATTACATGGGCAAATCTCTGATGCCTTTGACATATATGAAGAAATAAAAAATTCTGGATTCAATCTTGAGCCTAAAGCCATTATACTTCTTATTGAATACCACCAATCTGAAGGAGACTTGACTAGATTGCTTCAGCTACTTGAGGAATTGAATGATCCTGATTATCGTGTTGAGGGTAGCTGCAGGATCCTTTTATATTGTGTTAGATACAACCATTTGAGTTCTGCCATTGATTTACTCAAGCAACTCAAGGACACATTCCATGATAATGAATTGGCTATGGAAGCAATTCTTGATGAGGTATTTTCCCTAATTGCGGAGATAGAGCCTGTGAATTTGAAGATTGGCCTGGATTTACTTACTGCCATAAAGGAAGAGCTTGGCCTTAGGCCTTCACGAAAAAGTCTTGATTTTCTCCTTGCTGCTTGTGTTAATGGTAAAGATTTGGATAATTCTCGTTTGATTTGGAGAGAGTATCAGACTGCTGGCTTTACTCACAATGTTTTAAGTTTCTTAAGGATGTATCAGGCCTGTTTGGCTTGTGGAGACCACAAGTCTGCTGCAAACATACTACATAAAATACCAAAAGATGATCCCCATGTTTGCTGTGTCATCAAGGCATGTCAAACAACTTATGCGAAGTCCTCTGTAAAGGGCAAGAAGAAGAAGGAGGGGGATGCTTCAAATGATCTGAAGATTTGA 1857 38.23 MIEEFHFFHGVITDENSRSLSRLGYYEMLLWVRVNNEEKIQELCNGIAADDGADKPNLTENYVLALCESGRKEELLKVLEIIDITKVSSVDYVASIFKSLGRLSLASFMEKFVSAFKACGTLMIMYYGAEEISDFIFYYASNMPNLAVEDVILKFKDLHAQLVVTPSSTSYNKLVTYCCDSFKVHAALDIVDQMCEAGLTLSIEMFHSILRASEESFEFNLVHRIYSVICHQSLEPNCETFRIMINLHVKMKDFDGAYDLLKDMKKINLTPTAGIYNAIMGGYFREKNIYGGLMVLKQMGDADVKPDSQTFCYLLNNCECEEDIIKYYEKLKCAGVQVTKHVFMALINAYASCGQFEKAKQVVLDKGVPIKSLNEIKSVLVSALALHGQISDAFDIYEEIKNSGFNLEPKAIILLIEYHQSEGDLTRLLQLLEELNDPDYRVEGSCRILLYCVRYNHLSSAIDLLKQLKDTFHDNELAMEAILDEVFSLIAEIEPVNLKIGLDLLTAIKEELGLRPSRKSLDFLLAACVNGKDLDNSRLIWREYQTAGFTHNVLSFLRMYQACLACGDHKSAANILHKIPKDDPHVCCVIKACQTTYAKSSVKGKKKKEGDASNDLKI* 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5563130 5626881 - Vvi19g434 Vvi19g434 781933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g434 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Vvi19g434 618 PANTHER OS02G0132600 PROTEIN 1 609 - -
Vvi19g434 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Vvi19g434 618 Gene3D Tetratricopeptide repeat domain 321 447 IPR011990 GO:0005515
Vvi19g434 618 Gene3D Tetratricopeptide repeat domain 59 222 IPR011990 GO:0005515
Vvi19g434 618 Gene3D Tetratricopeptide repeat domain 448 609 IPR011990 GO:0005515
Vvi19g434 618 Gene3D Tetratricopeptide repeat domain 223 320 IPR011990 GO:0005515
Vvi19g434 618 Pfam Pentacotripeptide-repeat region of PRORP 169 318 IPR033443 -
Vvi19g434 618 TIGRFAM PPR: pentatricopeptide repeat domain 170 201 IPR002885 -
Vvi19g434 618 TIGRFAM PPR: pentatricopeptide repeat domain 240 266 IPR002885 -
Vvi19g434 618 TIGRFAM PPR: pentatricopeptide repeat domain 275 308 IPR002885 -
Vvi19g434 618 Pfam PPR repeat 343 362 IPR002885 -
Vvi19g434 618 Pfam PPR repeat 379 405 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g434 - - - vvi:100250302 1197.57
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g434 . . . Bda09g00385 . Bpe08g01139 . . . . Cma01g01150 . . . . . Cpe02g00751 Bhi09g01943 . . . Hepe01g1308 . . . . . . . . . Cone6ag0086 . . . Lsi04g01240 . . . . . . . . . Bma07g01313 . . Cmo01g01202 . . . . Car16g00562 . . . . . . . . . Cla05g01536 Cam05g1643 Cec05g1649 Cco05g1687 Clacu05g1637 Cmu05g1532 Cre05g1642 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006190 1 2 0 1 1 1 1 1 1 1 1 1 1 0 2 2 1 1 1 1 1 5 1 2 1 1 1 2 1 1 37