Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g435 ATGGATCGACAGGCTCATGATTATGCTGCTGCTATGGCATTTGCTCAGCAGCAGCAACAAGCAGCTAATGTTCAACAGCAGCAACCTTTTGGGTTTCATCCACAACACCAACCGTTCCCTCCATCAGTGCATGGTCCTCCTTTTCTACCCCCTCATCCTTCTCTCCAACAGTATCCTTTTCATCGCCACATGCCACCACAATCACAGCAACTCCATCCCCATCCTCCACCACATCCCCACCTCCTTCATCTCCAGCAGCAACAGCAGCCTCCATCTGCTTTCCCTCCTCATTTACCCTCTCACCTTGTTCCTTCACCTTTTCATGGTCCTTATGAATCTGGCTCGCCCCCATCTGCCCCTCCTTCTGATCCTGAACTTCACAAGCGGATAGATAAGCTTGTTGAGTATGCTGCCAAGAATGGCCCAGAATTTGAAGTCATGATCCGTGAAAAACAACAAGACAACCCAGCATACAGTTTCCTCTTTGGTGGTGAGGGGCATAATTATTATCGATATAAGCTTTGGTTATCTACACGTTCCTCAGCTGCTGCTGGGGCTTCGGCTTCAATGTTGGGCACGCCTCAAATGCATCAACAACCTTCATATCTACCATTTTATGACCAGCAGCAGCAGCAGCATCCTCAGCCTTTCCTAGGACATGGTCGACCAGATTTTGACCCCTCATCCAAATCTTTCAAAGGTCTGTCTGGACCACTTCCATCTGATGTTGCTATGGAGCTGAGTAATGTTCTGAACAATCTCACTGGTACCAAAGAGTCCATTAAAGGTGCCAAGATTTGGTTTATGCAGAGGTCTCCATTTGCACCAGCTTTGGCTGAGGCACTTAGAGATAGGGTCTTTGCTTTGGATGATTCTGAGAGACAATTGCATATAATTTACCTTGCCAATGACATTCTTTTTGACAGCTTGCAAAGGCGGATCAATCCACATGAACTTGATAATGAGGCCCTAGCATTTAAACCTGTCTTAGGTTCCATGCTTGCAAGGATTTACCACAACCCTCAAAACAAGGAGGAAAATCAATCACGATTACAGAAAATTCTACAGTTCTGGGCTTCCAAGGAAGTTTATGATCATGATACAATTTATGGGCTTGAGGGTGACATGATTGGTGGACCCCCAGGCAATTCTTTTTCAGGCCTTCTCAAGGAGTTATCTGCTGTTCCTGCGGATCCCTCAGCTGTTTCAGGATTGCCACAAACAGCACACCATAATGTACCACAGTGGCAGCCCGATAAGCCAAGTTCTATGCCAAGTTTACTAGAGCAAGAACAACCTGATAAACAAATGCCTTCCCTTGCAGCCATGCCGCCGTCCTTGGCTACACAGCAATTTCTTCCGAATGCAGTTCCTGCTGGTCCTTTCCTAGGATCAATGCCCATACCATCTTCTGTTCAACCAGCAAACCAACAACCTGCACTCCATTTGCCTACAGCCACTGGTCTTGGTGAAAAATTACCTCCATATCCTTTATTCCCACCTGGTCTTATTCCTGGAATGGTAAGAAAGATGCAGATTGGTAGTGGTGTGCCCTACTCCCCCATGAGCCCTTTGGACATCCCAACAGTTATACCTCTATCCAATGTATCACCATCTGAAATTCTTGAGAGAGTATCAAAATTCTTTAAAGAGATTGGAGAGGTCAATCCTTCTGAAGGACCGATGGAACCATCTGATTCAAAAGATGAAGACGATGAGTATGAAAGAGACCCTCCTGTTCGCAAGGGAGGAGCTTGCATTCCTCCCCCTCCTAACCTGCAGGTGGATCCTGAAACAGGGACGTATTCTGATGGAAGTGTAGAGCGGAAACCAGGATCCAGTGGCTCAGCACGGTTGGGACTTGGGGCCACAGCTAATCCAAATGAAGTGAGCCAATACGATGATGTTTACAGTTCTTATAGGAAACAGAGAAGCACCACCTACCATTCATCAATGAGTGCTAGAGTGGGTACAAGGTGA 1980 46.62 MDRQAHDYAAAMAFAQQQQQAANVQQQQPFGFHPQHQPFPPSVHGPPFLPPHPSLQQYPFHRHMPPQSQQLHPHPPPHPHLLHLQQQQQPPSAFPPHLPSHLVPSPFHGPYESGSPPSAPPSDPELHKRIDKLVEYAAKNGPEFEVMIREKQQDNPAYSFLFGGEGHNYYRYKLWLSTRSSAAAGASASMLGTPQMHQQPSYLPFYDQQQQQHPQPFLGHGRPDFDPSSKSFKGLSGPLPSDVAMELSNVLNNLTGTKESIKGAKIWFMQRSPFAPALAEALRDRVFALDDSERQLHIIYLANDILFDSLQRRINPHELDNEALAFKPVLGSMLARIYHNPQNKEENQSRLQKILQFWASKEVYDHDTIYGLEGDMIGGPPGNSFSGLLKELSAVPADPSAVSGLPQTAHHNVPQWQPDKPSSMPSLLEQEQPDKQMPSLAAMPPSLATQQFLPNAVPAGPFLGSMPIPSSVQPANQQPALHLPTATGLGEKLPPYPLFPPGLIPGMVRKMQIGSGVPYSPMSPLDIPTVIPLSNVSPSEILERVSKFFKEIGEVNPSEGPMEPSDSKDEDDEYERDPPVRKGGACIPPPPNLQVDPETGTYSDGSVERKPGSSGSARLGLGATANPNEVSQYDDVYSSYRKQRSTTYHSSMSARVGTR* 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5632104 5640466 + Vvi19g435 Vvi19g435 781934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g435 659 Gene3D Surp module 115 183 IPR035967 GO:0003723|GO:0006396
Vvi19g435 659 MobiDBLite consensus disorder prediction 553 659 - -
Vvi19g435 659 MobiDBLite consensus disorder prediction 15 33 - -
Vvi19g435 659 Pfam CID domain 246 370 IPR006569 -
Vvi19g435 659 PANTHER SR-RELATED CTD ASSOCIATED FACTOR 6 119 655 IPR039037 GO:0006874
Vvi19g435 659 MobiDBLite consensus disorder prediction 399 435 - -
Vvi19g435 659 MobiDBLite consensus disorder prediction 596 610 - -
Vvi19g435 659 MobiDBLite consensus disorder prediction 619 659 - -
Vvi19g435 659 ProSiteProfiles SURP motif repeat profile. 129 173 IPR000061 GO:0003723|GO:0006396
Vvi19g435 659 ProSiteProfiles CID domain profile. 239 380 IPR006569 -
Vvi19g435 659 SMART 558neu5 246 377 IPR006569 -
Vvi19g435 659 MobiDBLite consensus disorder prediction 34 54 - -
Vvi19g435 659 MobiDBLite consensus disorder prediction 405 433 - -
Vvi19g435 659 SMART surpneu2 127 179 IPR000061 GO:0003723|GO:0006396
Vvi19g435 659 Pfam Surp module 130 175 IPR000061 GO:0003723|GO:0006396
Vvi19g435 659 MobiDBLite consensus disorder prediction 15 126 - -
Vvi19g435 659 SUPERFAMILY Surp module (SWAP domain) 105 175 IPR035967 GO:0003723|GO:0006396
Vvi19g435 659 Gene3D - 244 378 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g435 - - - vvi:100255482 1181.78
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .