Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g436 ATGGCAGCTCCTGTCCCCCCAGGGGCACCTAGAGCCACGAATACACCGCCACCACCACCTAATTACAATCCTAATTATCAAAGAACGCCTGATTCGTTAGCTGAAAATATGCAAAACCTGCAAATTAATCGGCCACCTTCTGTGCCCAATTCTACCCCTAGACCTCCTCCCTCTTATATTCAATCCCCACCTTCCCATTCATCAGCCCCTTATTCAGCTCCTCAGCACTCTGCCCCTTTTCCTAGAGGGGCGCCTGTTTCTAGGCCCGGGCCATCTCCAGGGCCACAGTCAGGTGTTCTGGCAAGGCCAGGAATGGCTCCATCTGGACCTCCACAATCCACATTCCCTCCGAATATGGCTCCAGGAAGGCCCTCTGGTTATCCTATCAGTCAGGCTCTGCCCTTTGGGTCGAGACCGTCTACTGGGTCCTTTCCCTCTCCTATGGGTGGTCAAGTTACCACCTCTTCTGGGGCACCTCCCAGCGCATTCGCTTCCTCTTCTGCCGCACCTCCTAGTGCATTCCCAGCTTCTGGTTTCTCAGCTGGCCCAGTTATTCCCCCGGTGGCTGCCCGACCTGGTGTGTTTGCATCTTCTCCTTTGTCCACAGGTCCGATAATTCCCCCTTCAAGTGCACCTGGTGGGCCCACTAGTAATGGGCCACCTATGTTTGCATCAGCAGCATTGCAAGGTGGACCTCGGTATCCCTCGGCTGACAATACAATGCAAACACCAGTTGGGCATCCCCCTACAATGATGTCAACTCAGGCACCTTCCCAGCCTCCAACCATGCGAACTCTCCTCGGAAGTACAGCTCCCAATGTTCCACCAGGTCCTCCAGTGCAAACAGCCCCAACAGCCATGCCATTTTCAGCTGCACCTCAAGGTGTGCCACCGCCTTCTGGTTCTCCATATGGCCTGCAGACATGGCCAATGCAACCACGGCAGGTGGCTCCACCACCAACAATTCCTGGTTCTGTGCAACCACCTAGAATGTTTGGAATGCCACCACCACCGCCAAATCAATCTATGGCTGCTATGCCACCTGCTATGAGTCAAACTGGAGCACCTTTGGCAGGTCCATCAAAGATTGATCCTAATCAAATTCCTCGGCCCATTCCAAATACCTCTGTGATTCTGCATGAAACTCGTCAGGGCAATCAGGCTAACCCTCCTCCGCCCGCCACAAGTGATTACATTGTTAGGGATACTGGGAATTGCAGTCCACGATACATGAGGTGCACCATCAATCAGATCCCATGCACTGCTGATCTTTTGACAACATCAGGAATGCAGTTAGCCTTGTTGGTCCAACCTTTGGCCCTTCCTCATCCATCTGAGGAGCCCATCCAAGTTGTGGATTTTGGAGAAAGTGGTCCTGTTCGATGCTCCCGTTGCAAAGGTTACATTAATCCCTTCATGAAGTTTATTGATCAGGGAAGGCGTTTCATCTGTAACTTATGTGGATTTACTGATGAAACACCTCGTGACTACCATTGCAATTTGGGGCCAGATGGCAGGCGTAGAGATGCTGAGGAAAGGCCTGAGCTATGTAGAGGAACAGTGGAATTTGTTGCTTCAAAGGAATACATGGTGCGTGAGCCAATGCCTGCTGTGTTTTTCTTTCTGATCGATGTATCAATGAATGCAATACAGACTGGTGCAACTGCAGCAGCTTGCAGTGCAATCACTCAAGTTATCACTGATCTTCCTGAAGGTCCTCGAACAATGGTGGGAATAGCAACATTTGATTCTACAATCCATTTTTATAATCTGAAACGTGCATTACAGCAGCCTCTAATGCTCATTGTTCCTGATGTACAAGATGTTTACACTCCCCTCCAGACTGATGTAATTGTTCAGCTTTCCGAGTGTCGTCAACATTTAGAGCTGTTACTGGAAAACATACCAACCATGTTTCAGAATAATAGAACTGCTGAATCAGCCTTCGGTGCAGCAATCCAGGCTGCTTTCTTAGCGATGAAGAGTACTGGAGGAAAACTTCTGGTGTTTCAGTCAGTCTTGCCTTCAGTTGGCATCGGAGCCCTTTCTGCCAGAGAGGCTGAAGGAAGAACTAATATCACTGCAGGGGAGAAGGAGGCCCATAAATTACTCCAACCAGCAGACAAAACTCTGAAAACAATGGCAATTGAATTTGCTGAGTATCAGGTCTGTGTTGATGTTTTTATTACTACCCAAACCTATGTAGATATTGCATCTATTGCTGTCATCCCAAGAACTACAGGAGGACAGGTGTATTATTATTACCCCTTCTCAGCCCTTTCTGATCCTGCTAAGCTTTACAATGACCTTAGATGGAACATCACAAAGCCCCAAGGTTTTGAGGCAGTGATGCGTGTCAGATGCAGCCAGGGTCTTCAAGTTCAAGAGTACTCTGGAAACTTTTGCAGACGCATTCCAACAGATGTTGACTTACCTGGGATTGACTGTGACAAAGCTATCATGGTAACATTAAAACATGACGATAAGTTGCAGGATGGCTCCGAATGTGCTTTTCAGTGTGCCCTTCTTTACACCACTGTTTATGGCCAGAGAAGAATTCGAGTTACTACTCTCTCTCTACCATGTACAAGTATGCTAAGTAATTTGTTCCGCTCAGCCGACTTGGATACTCAATTTGCATGTTTTCTGAAGCAAGCGGCAAGTGAAATTCCTTCAACACCACTCTCACAAGTTAGGGAGCAAGTGACGAACCTTTGCATTAACATTCTGCATTCATATCGTAAATTTTGTGCAACAGTATCATCATCTGGACAACTAATTCTTCCTGAGGCACTTAAACTTCTGCCTTTATACACCCTTGCATTGATCAAAAGTATTGGACTGCGAACTGATGGGAGAATAGATGATCGGTCATTTTGGATCAATTATGTTTCCCCACTTTCTACTCCTCTGGCAATACCTCTGGTGTACCCGAGGATGATGGCTATCCATGACCTTAATTCACATGAAGGGGACAGGCCTCTTATTCCTCCTACAATTCCACTTTCCAGTGAGCATGTTAGCGATGATGGAATCTATCTACTGGAGAATGGTGATGATGGTTTGATTTATATTGGGAATTCGGTGAATCCAGATATCATGCGACAACTGTTTGGCATTTCTTCGGTTGACGTAATTCCTAGTCAGTTTGTGCTGCAGCAGTATGACAATCCCTTGTCAAAGAAACTAAATGAACTGGTAAATGAGATAAGGCGCCAAAGATGTTCATACCTCCGCATAAAATTATGCAGAAAAGGAGATGCATCAGGGATGCTCTTCTTCTCATTTATGGTCGAAGACAAGACTGCAATTGGACTCTCCTATGTTGAATTTCTAGTACATATCCATCGGCAAATCCAGATCAAAATGTCTTGA 3375 46.9 MAAPVPPGAPRATNTPPPPPNYNPNYQRTPDSLAENMQNLQINRPPSVPNSTPRPPPSYIQSPPSHSSAPYSAPQHSAPFPRGAPVSRPGPSPGPQSGVLARPGMAPSGPPQSTFPPNMAPGRPSGYPISQALPFGSRPSTGSFPSPMGGQVTTSSGAPPSAFASSSAAPPSAFPASGFSAGPVIPPVAARPGVFASSPLSTGPIIPPSSAPGGPTSNGPPMFASAALQGGPRYPSADNTMQTPVGHPPTMMSTQAPSQPPTMRTLLGSTAPNVPPGPPVQTAPTAMPFSAAPQGVPPPSGSPYGLQTWPMQPRQVAPPPTIPGSVQPPRMFGMPPPPPNQSMAAMPPAMSQTGAPLAGPSKIDPNQIPRPIPNTSVILHETRQGNQANPPPPATSDYIVRDTGNCSPRYMRCTINQIPCTADLLTTSGMQLALLVQPLALPHPSEEPIQVVDFGESGPVRCSRCKGYINPFMKFIDQGRRFICNLCGFTDETPRDYHCNLGPDGRRRDAEERPELCRGTVEFVASKEYMVREPMPAVFFFLIDVSMNAIQTGATAAACSAITQVITDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTPLQTDVIVQLSECRQHLELLLENIPTMFQNNRTAESAFGAAIQAAFLAMKSTGGKLLVFQSVLPSVGIGALSAREAEGRTNITAGEKEAHKLLQPADKTLKTMAIEFAEYQVCVDVFITTQTYVDIASIAVIPRTTGGQVYYYYPFSALSDPAKLYNDLRWNITKPQGFEAVMRVRCSQGLQVQEYSGNFCRRIPTDVDLPGIDCDKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSMLSNLFRSADLDTQFACFLKQAASEIPSTPLSQVREQVTNLCINILHSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSIGLRTDGRIDDRSFWINYVSPLSTPLAIPLVYPRMMAIHDLNSHEGDRPLIPPTIPLSSEHVSDDGIYLLENGDDGLIYIGNSVNPDIMRQLFGISSVDVIPSQFVLQQYDNPLSKKLNELVNEIRRQRCSYLRIKLCRKGDASGMLFFSFMVEDKTAIGLSYVEFLVHIHRQIQIKMS* 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5676839 5712392 - Vvi19g436 Vvi19g436 781935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g436 1124 PANTHER SEC24-RELATED PROTEIN 145 1123 - -
Vvi19g436 1124 MobiDBLite consensus disorder prediction 109 123 - -
Vvi19g436 1124 Gene3D - 401 518 - -
Vvi19g436 1124 Pfam Gelsolin repeat 996 1065 IPR007123 -
Vvi19g436 1124 Gene3D Severin 978 1100 IPR029006 -
Vvi19g436 1124 SUPERFAMILY vWA-like 534 774 IPR036465 -
Vvi19g436 1124 Pfam Sec23/Sec24 zinc finger 459 497 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vvi19g436 1124 SUPERFAMILY Zn-finger domain of Sec23/24 446 532 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vvi19g436 1124 CDD Sec24-like 534 778 IPR041742 GO:0006886|GO:0006888|GO:0030127
Vvi19g436 1124 MobiDBLite consensus disorder prediction 1 179 - -
Vvi19g436 1124 Gene3D Sec23/Sec24 helical domain 863 1119 - -
Vvi19g436 1124 Gene3D von Willebrand factor, type A domain 536 776 IPR036465 -
Vvi19g436 1124 SUPERFAMILY beta-sandwich domain of Sec23/24 271 873 - -
Vvi19g436 1124 MobiDBLite consensus disorder prediction 1 25 - -
Vvi19g436 1124 Pfam Sec23/Sec24 helical domain 874 969 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vvi19g436 1124 CDD GIY-YIG_SF 1011 1031 - -
Vvi19g436 1124 PANTHER VON WILLEBRAND FACTOR, TYPE A-RELATED 145 1123 - -
Vvi19g436 1124 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 978 1120 IPR036180 -
Vvi19g436 1124 MobiDBLite consensus disorder prediction 48 63 - -
Vvi19g436 1124 Gene3D - 406 862 - -
Vvi19g436 1124 MobiDBLite consensus disorder prediction 26 47 - -
Vvi19g436 1124 Pfam Sec23/Sec24 trunk domain 534 774 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vvi19g436 1124 SUPERFAMILY Helical domain of Sec23/24 874 977 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vvi19g436 1124 MobiDBLite consensus disorder prediction 134 173 - -
Vvi19g436 1124 Pfam Sec23/Sec24 beta-sandwich domain 779 862 IPR012990 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g436 K14007 SEC24; protein transport protein SEC24 - vvi:100265768 2062.34
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g436 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006525 2 1 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 0 1 1 1 2 1 1 38