Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g438 ATGGCCGATGCTTTGTTTTCAGTGGTTTTCGACATCTTGATCCAGCGCGTGCATCAGGCGATAGCCGTAGCCGTAGATCACGATGAGATCAGTAACCTGAACTTACATGTCGGCTTTGACTCAAGTCACAGGAAGAACACAGCCCTTCATATTGCTGCAAGAGTAGGGAACAAGAAAATGGTGGAAGCGTTACTCAGCGAGGGTACACCAGCTTCGCTTCTCACTGAGAACTCTAAACATGAAACCCCACTTCACATTGCAGCTAGATCTGGCCATGTTCATGTGGTAAAATTTCTTATTGATTGGGCGACCCAGTCCACAGATGTCGAAGCTGGAGGGATACAACAGGTACTGAGAATGAGAAACATGGAAGGCAACACGCCATTACATGAAGCTGTTAGAAATGGTCACCATTCTACTGTGCTTGTATTGGTGGAAGCAAATGACTCAGATCTGCTTGTTTCACTCAACAATGCTGGGGAGTCTCCACTTTTTATGGCTGTTGATGTGAGGGCAAGTGAAATTGTGAAAACTATCTTACCAAATTCAAATCCCTATTCTCTTCTCCATAGAAGTTCCGACGGCCAGACGATTCTCCATAGGGCCATTCTGAGAGCTGATTTGAAGACTATGAAAATTATAATCCAACATATGCCGGAATTGGTGAATGAAAAAGATAGCTGCGGAAGAAGTCCTCTTCACTATGCTGCAGCCTCCGGTGCCTTAGCCTTGGTCGATCATTTACTACAACTAAAACCTTCCAATGGATCTTTCCTCGATAACAATTTAGCAACACCGGCTCATATGGCTGCAGAAAATGGGCATCTGAATGTATTGAAATTGTTTGTCAAGCGCTGCCGCTATTGGGTCGAATTACTCAACAATCACCACCAAAATATCCTTCATGTAGCAGCCCAAAATGGACATCTTAAAGTTGTTCGATATATTCAAAATATGTTCATGGTGAATGATCTATTGAATGAGACCGATGAGGATGGAAACACCCCTTTGCATCTTGCAGCAGCAAAATTGCACAGCAGCATCGTAAGTACTCTTGTCCAAACAGGAAATATGGATACTACGGCAATCAATAAAAAAGGTGAAACAGTCCTGGATATTGCTAGGAAATTTCAGCTTGTTTCACCAAGTAATGAAGGAAATGAAGGCACGGATGGGAATCAAGCCCAAGCAACTCCAAACAAGACTGGTTGTGCCGGTGATGAAAAGATAGAAGCAAAAAAGCAACGGACCATAGAAATTCTGAAGGCGGCAAGTGCAAAGCAAGCTAAAAAGTTAGAGGGAATCCTAGAACAAGAAGATCTTATAATAGAATCAATACGGGACAAGAGGCGTAAAGAAATGGCTGGCACCCTCATAGTAATGGCAACATTAGTTGCAACAGTCACATTTACAGCGGCATTCACCCTTCCAGGGGGCATCCAAAGTGAAGGTCCACATCAAGGGATGGCAGTGCTAACAAGGAAAGCAGCATTCAAAGCTTTTATTGTCACTGATACAGTAGCTATGACTACGTCCATGACTGCTGCAGTGATTCTTTTCACATCATCTTGGAATGATGAGAAAAATAAATGGAATCTGCACTTTATTGCCTTGCAGTTGTTATGGATGTCACTTGCCTCAATGGGACTGGCATTCCTTACTGGACTGTTCACTGTTCTATCACACTCAATGGAGCTTGCTATCATGGTTTGTTTTATTGGCTGTCTCTTCCCAAGTCTCCTCTACTTGCTGGGGCCTCTTATTCTCCCTGAGGAATTTGTTTGGTCACTCGTGGATATCATAGAGAAAACCAAAACCAAAATATACTCATTTTGGATATTGCACAACAAATAA 1854 42.88 MADALFSVVFDILIQRVHQAIAVAVDHDEISNLNLHVGFDSSHRKNTALHIAARVGNKKMVEALLSEGTPASLLTENSKHETPLHIAARSGHVHVVKFLIDWATQSTDVEAGGIQQVLRMRNMEGNTPLHEAVRNGHHSTVLVLVEANDSDLLVSLNNAGESPLFMAVDVRASEIVKTILPNSNPYSLLHRSSDGQTILHRAILRADLKTMKIIIQHMPELVNEKDSCGRSPLHYAAASGALALVDHLLQLKPSNGSFLDNNLATPAHMAAENGHLNVLKLFVKRCRYWVELLNNHHQNILHVAAQNGHLKVVRYIQNMFMVNDLLNETDEDGNTPLHLAAAKLHSSIVSTLVQTGNMDTTAINKKGETVLDIARKFQLVSPSNEGNEGTDGNQAQATPNKTGCAGDEKIEAKKQRTIEILKAASAKQAKKLEGILEQEDLIIESIRDKRRKEMAGTLIVMATLVATVTFTAAFTLPGGIQSEGPHQGMAVLTRKAAFKAFIVTDTVAMTTSMTAAVILFTSSWNDEKNKWNLHFIALQLLWMSLASMGLAFLTGLFTVLSHSMELAIMVCFIGCLFPSLLYLLGPLILPEEFVWSLVDIIEKTKTKIYSFWILHNK* 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5716879 5720662 - Vvi19g438 Vvi19g438 781937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g438 617 Pfam Ankyrin repeat 124 152 IPR002110 GO:0005515
Vvi19g438 617 ProSiteProfiles Ankyrin repeat region circular profile. 44 68 - -
Vvi19g438 617 ProSiteProfiles Ankyrin repeat profile. 332 356 IPR002110 GO:0005515
Vvi19g438 617 ProSiteProfiles Ankyrin repeat region circular profile. 124 148 - -
Vvi19g438 617 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 116 577 - -
Vvi19g438 617 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 27 105 - -
Vvi19g438 617 MobiDBLite consensus disorder prediction 382 401 - -
Vvi19g438 617 Pfam Domain of unknown function 449 558 IPR026961 -
Vvi19g438 617 Pfam Ankyrin repeats (3 copies) 22 102 IPR002110 GO:0005515
Vvi19g438 617 Pfam Ankyrin repeats (3 copies) 165 250 IPR002110 GO:0005515
Vvi19g438 617 ProSiteProfiles Ankyrin repeat profile. 228 250 IPR002110 GO:0005515
Vvi19g438 617 ProSiteProfiles Ankyrin repeat region circular profile. 228 250 - -
Vvi19g438 617 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 116 577 - -
Vvi19g438 617 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 27 105 - -
Vvi19g438 617 Pfam Ankyrin repeats (many copies) 300 352 IPR002110 GO:0005515
Vvi19g438 617 SUPERFAMILY Ankyrin repeat 43 377 IPR036770 -
Vvi19g438 617 SMART ANK_2a 124 154 IPR002110 GO:0005515
Vvi19g438 617 SMART ANK_2a 79 111 IPR002110 GO:0005515
Vvi19g438 617 SMART ANK_2a 332 362 IPR002110 GO:0005515
Vvi19g438 617 SMART ANK_2a 228 260 IPR002110 GO:0005515
Vvi19g438 617 SMART ANK_2a 194 224 IPR002110 GO:0005515
Vvi19g438 617 SMART ANK_2a 262 292 IPR002110 GO:0005515
Vvi19g438 617 SMART ANK_2a 159 187 IPR002110 GO:0005515
Vvi19g438 617 SMART ANK_2a 296 327 IPR002110 GO:0005515
Vvi19g438 617 SMART ANK_2a 44 73 IPR002110 GO:0005515
Vvi19g438 617 MobiDBLite consensus disorder prediction 382 405 - -
Vvi19g438 617 Gene3D - 288 380 IPR036770 -
Vvi19g438 617 Gene3D - 183 287 IPR036770 -
Vvi19g438 617 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Vvi19g438 617 ProSiteProfiles Ankyrin repeat region circular profile. 79 101 - -
Vvi19g438 617 ProSiteProfiles Ankyrin repeat profile. 79 101 IPR002110 GO:0005515
Vvi19g438 617 ProSiteProfiles Ankyrin repeat profile. 124 148 IPR002110 GO:0005515
Vvi19g438 617 Gene3D - 15 182 IPR036770 -
Vvi19g438 617 ProSiteProfiles Ankyrin repeat region circular profile. 332 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g438 - - - vvi:104877544 1169.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009752 2 0 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 2 0 0 0 0 0 0 0 16 31