Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g44 ATGATTACACTCATGACTATCAAACAAGATTTTATACCTCCTTCCAGAAATGGCAGTACTAGTATATCTGTGAGCGTTGTGGTTGGCATTGTGGCTGGAGTCATTCTTCTTATCTTCCTGGTTATCGGTATCCTTTGGTGGAGAGGCTGCCTAAGGCGCAAAGATACATTGGAACAAGATTTAAAGGGTCTAGATCAGCACACTGGTTTGTTTACCCTAAGGCAAATTAAGGCTGCCACAAACAACTTGGATGCTGCCAACAAAATTGGAGAAGTTGGATTTGGTTCTATTTACAAGGGCCTCTTATCGGATGGCACCGTAATTGCAGTGAAGCAGCTTTCTTCCAAGTCAAAACAAGGAAACCGTGAGTTTGTGAATGAGATAGGCATGATTTCTGCTCTTCAACATCCTCATCTTGTGAAGCTCTATGGCTGTTGTATAGAAGGAAATCAGTTGTTGCTGATATATGAGTAA 474 41.56 MITLMTIKQDFIPPSRNGSTSISVSVVVGIVAGVILLIFLVIGILWWRGCLRRKDTLEQDLKGLDQHTGLFTLRQIKAATNNLDAANKIGEVGFGSIYKGLLSDGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLIYE* 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 496540 500699 - Vvi19g44 Vvi19g44 781543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g44 157 Gene3D Phosphorylase Kinase; domain 1 49 157 - -
Vvi19g44 157 ProSiteProfiles Protein kinase domain profile. 83 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g44 157 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 43 157 - -
Vvi19g44 157 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 43 157 - -
Vvi19g44 157 Pfam Protein tyrosine and serine/threonine kinase 85 157 IPR001245 GO:0004672|GO:0006468
Vvi19g44 157 SUPERFAMILY Protein kinase-like (PK-like) 65 157 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g275 Vvi19g44 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76460 PF07714 PK_Tyr_Ser-Thr 4.40E-12 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g44 - - vvi:100265805 246.128