Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g444 ATGGACAGCAGACAAAGAAAGCGGAGAAGCCATGTTCCAACAAGATCTGGACCGGTTAAGTTACCCAAATCCCGCTGCTCAGGAAAAAAATTCCTATCAATCATAGATACCCTTTCTGTGGAGAAGAAAAATGTCATTAGCGGTATGGGATTTGGAGGATTGATGCAACTTGGCTGCAGAGAGTTGCGTTATGACCTACTAACGTGGATAGTCGCCAATTACGACATTGGCTACCACCGCGTATGTATGCAAACTAATGTTGCTGTCCCAATCACGCCCCAAGATGTTAGAGAGGTCCTGGGCATCCCGGACCAAGGCGTTGACATTGTCATTCACAATAGGCGCGCCACACCCAATTGCACATACAACATAAAAGTATTGGAAGATAAATTGCATGATCTACCCATTGGCGATGAATTCATGAAGTGTTTCCTCATTTTCGCCTGTGCCACTATCCTTGCCCCAAACTCAAAACAAGAAGGCATGCATGACTTGTGGGACACAATTTGGGATAGTGATGTGGGTGTCCGCATAAATTGGGCCAAGTTTCTTCTCCAATATCTAGAGGATGGGATAAGGGACTACCGGAATACTCACCCTACATACATTAGAGGTTGTTTGCTGTTTCTTCAGCTTTTTTATATGACGAAGTTCTACCTCATGTCTTTCAAAGTGGAAGTGCGCAGTCCACTATGTGCTGCATGGACAGATGAGCACATCAAGTGTCGCTTGGCAGCCGAAATACAAACTTATGGCAATTATGGTCATGTCCAGGTTTTAGAGCAAAGCAACCCACATGTACGTAATGATGCACGACCGTGTGAGGCAGGAAGCTCACATTCTGATGACCCCACTGAGACAATTGAAGCACGGTTGATCCGGAATTTAGAGCATCTTATTAGCCTCGCTTCATCTGTGGCACAAGACATTGCCACACTACGTTCAAGGTCTAGTGGAGGACAACGTGGCTGTGCACTTACCCCACCAGATGAAGCAGTTAATGTCGACATAAACAAAGAAGAGGGTAGCACCAATGTGCATCCATTTAGTGATCAACTAATGGGAAAAGGAAGCGGTTCAGCAACGACACGTTCTGGCCAACAAAGGGCCACCAATGCAGCAGCCGATGATGGCCCGTCTACTGAACAAGAGCCATGCCCACCTTCAACAGAGGGTGCTGAATTTCATTCACCTAAAGGGGTACAAATTGGTGTTGAAGAAGGCCATGGCAGCAAACTGGTTAAATCTACACCTAGACGGAGATTTAAACACACGACGAAAAGGCTTGTAAAGCCAGCCGCCATTTGCCCCTTCGTCTCTCAATGTGTTAGACAATTTCCAAAAATCAGCCATGAAGAAAGGATGGTTGCTGATTATGCATTGTCGGAAGGCGGTGACCCAAGTGAGATCTTGTGTCATATGCATGGGACATACATCACACGGGATGAACTTTCTTCGCTCAATGGAGGTCGTTGGGTGAACAGTATGATTATAGGGGTTGTGTGTCGAATGCTAAATGTAGAACAAGAAAGACCACCGCGTGCACACTATTTTGACCCATCATTCTCTGTGGTGCTGGCCAGCCTGACGACAAAGGCAAAAAAGCATGAAATAAGGGACCGGTGTCGGATGTTCCTTGATGCTGAATATGTGGGCCATGATTTCTCAAGTTGCGAGCTGCTTTTCTTTCCCGTCTGCGATAACAACCATTGGCACGTGCATGTGCTGAATATTCCATCGTCCAGAGTCGAAATCTTATCTTCGTTGCCTTTAAGAAGGGGCAATGGGATAAGTGTCGTATCAAGACGATTGTCTGAGACAATTGGAAAAGCATTTCATGCTCATGGCATGCTACGACGAGTGGAGGTCTCAAAATTCGAGCATGTACAACCCCAACTTGTGCAACAACAAAATGGATTTGATTGTGGCATGTTTGCAATAAAGTACATGCAACATTGGAATGGGGCCACACTAGCACAAGCAATCGCGGAGGACAAGATGCACCTTTATCGCTTGAGGCTGGTTGTTACGTTGGTTATGAATCCCGCAAACAATGCTAGAGATACGGTCATGAAGCCAACATTCAGAAAACATGATTCCTCACAAGCATGA 2112 45.83 MDSRQRKRRSHVPTRSGPVKLPKSRCSGKKFLSIIDTLSVEKKNVISGMGFGGLMQLGCRELRYDLLTWIVANYDIGYHRVCMQTNVAVPITPQDVREVLGIPDQGVDIVIHNRRATPNCTYNIKVLEDKLHDLPIGDEFMKCFLIFACATILAPNSKQEGMHDLWDTIWDSDVGVRINWAKFLLQYLEDGIRDYRNTHPTYIRGCLLFLQLFYMTKFYLMSFKVEVRSPLCAAWTDEHIKCRLAAEIQTYGNYGHVQVLEQSNPHVRNDARPCEAGSSHSDDPTETIEARLIRNLEHLISLASSVAQDIATLRSRSSGGQRGCALTPPDEAVNVDINKEEGSTNVHPFSDQLMGKGSGSATTRSGQQRATNAAADDGPSTEQEPCPPSTEGAEFHSPKGVQIGVEEGHGSKLVKSTPRRRFKHTTKRLVKPAAICPFVSQCVRQFPKISHEERMVADYALSEGGDPSEILCHMHGTYITRDELSSLNGGRWVNSMIIGVVCRMLNVEQERPPRAHYFDPSFSVVLASLTTKAKKHEIRDRCRMFLDAEYVGHDFSSCELLFFPVCDNNHWHVHVLNIPSSRVEILSSLPLRRGNGISVVSRRLSETIGKAFHAHGMLRRVEVSKFEHVQPQLVQQQNGFDCGMFAIKYMQHWNGATLAQAIAEDKMHLYRLRLVVTLVMNPANNARDTVMKPTFRKHDSSQA* 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5759971 5763303 - Vvi19g444 Vvi19g444 781943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g444 703 SUPERFAMILY Cysteine proteinases 446 681 IPR038765 -
Vvi19g444 703 Pfam Ulp1 protease family, C-terminal catalytic domain 491 652 IPR003653 GO:0006508|GO:0008234
Vvi19g444 703 MobiDBLite consensus disorder prediction 341 398 - -
Vvi19g444 703 PANTHER OS07G0283600 PROTEIN-RELATED 23 216 - -
Vvi19g444 703 MobiDBLite consensus disorder prediction 341 387 - -
Vvi19g444 703 Gene3D Adenoviral Proteinase; Chain A 436 681 - -
Vvi19g444 703 MobiDBLite consensus disorder prediction 1 23 - -
Vvi19g444 703 ProSiteProfiles Ubiquitin-like protease family profile. 477 653 IPR003653 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g444 - - - vvi:100852586 1420.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g444 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .