Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g448 ATGGGAAGAAAAAACAGCATGTTCCAGTATGCTGATGGTGTGGACAAGTGGTTGATGTTGTTGGGGACTCTGGGCTGCATAGGAGACGGGTTGCAGAGCGCTCTTTCTATGTTCATTCTAAGCGATATCATCAACGACTATGGAAAAAGCAATAGTTCTATCACAATACATATTGTAGACAAGTATGCACTCAAGCTACTCTATGTTGCTGTTGGAGTTGGGATTTCAGCATTTATCGAAGGAATATGTTGGACAAGAACTGCAGAGAGACAGACTTCTCGGATGAGAATAAAGTACCTGAAATCTGTTCTAAGACAAGAAGTTGGTTTCTTTGATTCCCAAGGTGCTGATTCTTCAATAACATACCAGGTTGTCTCAACCCTCTCCTCAGATGCCAACTCAATCCAAGCCGTGATAGGCGAGAAGATACCTGACTGCCTTGCCTACACGGCTGCTTTCATCTTCTGCCTGCTGTTTGCCTTCATATTGTCATGGAGATTAGCATTGGCGTCTCTTCCTTTTACAGTCATGTTCATCATTCCGGGACTGGGATTTGGGAAGCTGATGATGGACCTGGGAATGAAGATGATTGAATCTTATGGGGTTGCTGGTGGGATTGCGGAGCAGGCCATTTCTTCAATAAGAACTGTATATTCATTTGTGGGAGAGCATCAAACACTAGTTAAGTTCAGTCAAGCACTTCAGAAAACTATGGAGCTAGGAATAAAGCAAGGTTTCGCCAAGGGATTGATGATGAGTAGCATGGGAATAATCTATGTCAGCTGGGCTTTCCAGGCCTGGATTGGGACTTATCTGGTTACTAAGAAAGGAGAAAGCGGTGGCCCGTTATTTGTAGCTGGATTCAATGTCCTCATGGGAGGATTGTATGTCTTGAGTGCACTCCCAAATCTGACTTCCATCTCAGAGGCAACAGCTGCTGCTACTCGGATTTTTGAGATGATCGATCGAGTTCCTGCCTTGGACTCTGAAGATAGAAAGGGGAAGGCTTTAGCATATGTGAGAGGGGAGATCGAGTTTAAGGACATCCATTTTAGTTACCCATCAAGACCTGATTCACCAATTCTACAGGGTTTCGATCTAAGAGTTCGGGCTGGTAAGACCGTGGGGCTTGTTGGGGGCAGTGGCTCTGGGAAGTCCACTGTCATTTCATTGCTTGAAAGATTTTATGACCCCACCAAAGGAGAGATTCTCTTGGATGGATACAAACTTGTAGTAAGTGCGGCTACGGCCGCAAATGCTCATGACTTCATCACCAAGTTACCAGATGGATACGAAACACAGATGTCTTTTTCTAGTGCAAAAGATGGAAAAGGTAAAAGGATGGTTTATAGCGAGGCATTTGACTTCAAACAGTACTTAGAAATTACTATTTCCATATGCAAAAGTTTTAAGTTACTAGTTGGGCAATTTGGAGTTCAACTGTCTGGTGGGCAGAGGCAGCGAATTGCCATAGCGAGGGCTCTAATCAGGGATCCGAAAATCCTCCTGCTTGATGAAGCTACAAGTGCTTTGGATACAGAGTCTGAAAGAATAGTACAGGATGCACTGGATCAAGCATTGGTAGGGAAGACAACAATTGTTGTTGCCCATCGCCTCTCCACAATCCGAATGGCCAGTATGATTGTGGTTCTTCAGAATGGGAGAGTTGTAGAAAAAGGGTCACATGATGATGAAGAGGATTCTTTCTGTTCTGATTATCACACACCGAAAAGTTATGAAGAAGATTCAGAGAATGCCTTGCTTGGATGCCTAGGGGCCATAGGCTCTGCAGCAGTTCAACCCATCAATGCTTACTCCGTTTGTGCAAGGTTAGCTACAGAAGCCAGCATGGTTCGAACTCTTGTTGGGGAGCGTATGTCTTTACTGGTTCAAGCGGTCTTTGCGACTTCTTTTGCATATGGACTAGGACTTGTGCTCACATGGAGACTCACCCTTGTGATGATTGCAGTGCAGCCACTAGAAGGAAGCCAATTAGCAAGTGAAGCTACTTTCTTAACAACAGCTTCCATGGCTTTGGCTTTCTGGTATGGAGGGAGGCTAATGACACAAGGATTAATAACCCCAAAGCGCCTTTTTCAAGCATTCTTGATCTTGACATTTACGGCTAAAATCATTGCAGATGCAGGAAGCATGACTTCTGATTTATCTAAAGGAAGCAATGCCATCCGATCACTGAAAAATGTATTCTTTGCATATCCAGCAAGGCCAAATCAATTGATCCTGAAGGGCCTGAGCCTTAAAATTGAAGCAGGAAGAACAGTTGCATTAGTGGGGCAGAGTGGCTCTGGAAAATCTACCATCATCGGGCTTATTGAGAGATTTTACGACCCACTGAGGGGATCAATACATATAGATGAACTGGATATCAAGAACCATAACTTAAGGATCCTGAGATCAAATATCGCACTAGTCAGCCAGGAGCCAACCCTTTTTGCAGCAACCATCCGTGAGAACATTGCCTATGGGAAAGAAAATGCTACAGAATCCGAGATAAGGAAGGCTGCGGTTCTTGCCAATGCCCATGAATTCATAAGTGGAATGAAAGACGGGTACGACACTTACTGTGGAGAAAGAGGGGTTCAATTATCAGGAGGCCAGAAACAAAGAGTAGCAATAGCTCGAGCCATACTCAAGAATCCATCAGTCCTGCTCCTGGACGAGGCGACCAGTGCCCTGGACAGCGCATCCGAAAGGTCGGTCCAAGAAGCACTTGACAAGATGATGGTTGGAAGAACATGTCTAGTCATTGCTCACCGGTTGTCCACAATACAGAACTCTAACACCATTGCTGTAATCAAGAACGGAATGGTCGTGGAAAAAGGGTCACATTCTGAGCTTCTTTCCTTTGGACCGGGCGGCTCATACTACTCCTTAATAAAACCACAAGTGGGTGACTCCCCTTACCGGTGA 2931 44.87 MGRKNSMFQYADGVDKWLMLLGTLGCIGDGLQSALSMFILSDIINDYGKSNSSITIHIVDKYALKLLYVAVGVGISAFIEGICWTRTAERQTSRMRIKYLKSVLRQEVGFFDSQGADSSITYQVVSTLSSDANSIQAVIGEKIPDCLAYTAAFIFCLLFAFILSWRLALASLPFTVMFIIPGLGFGKLMMDLGMKMIESYGVAGGIAEQAISSIRTVYSFVGEHQTLVKFSQALQKTMELGIKQGFAKGLMMSSMGIIYVSWAFQAWIGTYLVTKKGESGGPLFVAGFNVLMGGLYVLSALPNLTSISEATAAATRIFEMIDRVPALDSEDRKGKALAYVRGEIEFKDIHFSYPSRPDSPILQGFDLRVRAGKTVGLVGGSGSGKSTVISLLERFYDPTKGEILLDGYKLVVSAATAANAHDFITKLPDGYETQMSFSSAKDGKGKRMVYSEAFDFKQYLEITISICKSFKLLVGQFGVQLSGGQRQRIAIARALIRDPKILLLDEATSALDTESERIVQDALDQALVGKTTIVVAHRLSTIRMASMIVVLQNGRVVEKGSHDDEEDSFCSDYHTPKSYEEDSENALLGCLGAIGSAAVQPINAYSVCARLATEASMVRTLVGERMSLLVQAVFATSFAYGLGLVLTWRLTLVMIAVQPLEGSQLASEATFLTTASMALAFWYGGRLMTQGLITPKRLFQAFLILTFTAKIIADAGSMTSDLSKGSNAIRSLKNVFFAYPARPNQLILKGLSLKIEAGRTVALVGQSGSGKSTIIGLIERFYDPLRGSIHIDELDIKNHNLRILRSNIALVSQEPTLFAATIRENIAYGKENATESEIRKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRVAIARAILKNPSVLLLDEATSALDSASERSVQEALDKMMVGRTCLVIAHRLSTIQNSNTIAVIKNGMVVEKGSHSELLSFGPGGSYYSLIKPQVGDSPYR* 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5812017 5816845 + Vvi19g448 Vvi19g448 781947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g448 976 Gene3D ABC transporter type 1, transmembrane domain 606 660 IPR036640 GO:0005524|GO:0016021
Vvi19g448 976 Gene3D ABC transporter type 1, transmembrane domain 6 333 IPR036640 GO:0005524|GO:0016021
Vvi19g448 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 732 969 IPR027417 -
Vvi19g448 976 Pfam ABC transporter 748 897 IPR003439 GO:0005524
Vvi19g448 976 Pfam ABC transporter 362 509 IPR003439 GO:0005524
Vvi19g448 976 SMART AAA_5 371 555 IPR003593 -
Vvi19g448 976 SMART AAA_5 757 949 IPR003593 -
Vvi19g448 976 SUPERFAMILY ABC transporter transmembrane region 604 881 IPR036640 GO:0005524|GO:0016021
Vvi19g448 976 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 309 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g448 976 SUPERFAMILY ABC transporter transmembrane region 7 328 IPR036640 GO:0005524|GO:0016021
Vvi19g448 976 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 410 IPR039421 -
Vvi19g448 976 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 732 970 IPR039421 -
Vvi19g448 976 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 583 607 IPR039421 -
Vvi19g448 976 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 411 564 IPR039421 -
Vvi19g448 976 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 669 731 IPR039421 -
Vvi19g448 976 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 606 660 IPR039421 -
Vvi19g448 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 564 IPR027417 -
Vvi19g448 976 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 578 IPR003439 GO:0005524
Vvi19g448 976 ProSitePatterns ABC transporters family signature. 481 495 IPR017871 GO:0005524
Vvi19g448 976 ProSitePatterns ABC transporters family signature. 869 883 IPR017871 GO:0005524
Vvi19g448 976 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 730 966 IPR003439 GO:0005524
Vvi19g448 976 Gene3D - 334 409 IPR027417 -
Vvi19g448 976 Gene3D - 468 564 IPR027417 -
Vvi19g448 976 Gene3D - 733 969 IPR027417 -
Vvi19g448 976 Gene3D ABC transporter type 1, transmembrane domain 667 732 IPR036640 GO:0005524|GO:0016021
Vvi19g448 976 Pfam ABC transporter transmembrane region 20 293 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g448 976 Pfam ABC transporter transmembrane region 607 660 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g448 976 CDD ABC_MTABC3_MDL1_MDL2 732 969 - -
Vvi19g448 976 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 317 - -
Vvi19g448 976 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 411 564 - -
Vvi19g448 976 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 410 - -
Vvi19g448 976 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 669 731 - -
Vvi19g448 976 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 583 607 - -
Vvi19g448 976 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 606 660 - -
Vvi19g448 976 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 732 970 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g448 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - vvi:100248698 974.156
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g448 . Blo03g01437 . . . . . . . . . Cma09g00928 . . . . . Bhi09g01941 . . . Hepe01g1307 Mch11g1155 . . . . . . . . . Cone9ag0100 . . . . Chy04g00994 . . . . . . . . . . . Cmo09g00924 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136