Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g45 ATGCCCTCCATTAACAGCCTTCTCTCTTCTTTACTCATTGCCTTCACTTTCTTCACAACTCTCACCTTCTCTGCAACTCTCCTCCCAAATAATGAAGGTGACACTACCATTCATTCTACCTCATTTTTCATAGTTCTATATATATACTCTCAAAAATCAATCTTATTATTATTACACTTTACAGTGGAAGCTCTGGAAGAGATCGCGGAAACTCTGGGGAAGACGGACTGGAACTTCAGTGCGGATCCGTGCGGCGGTGAGTGGGGTTGGGCGACGAAGAATCCGGTGAAGGGGTCGGAAAATGCTGTCACTTGTAGCTGCACCAACAACACTGTTTGCCATGTTGTTAGCATAGTCCTCAAGACTCAGAATCTCCCGGGATCTCTCCCACCAGAGCTGGTTAAGCTTCCTTACCTCCAAGAAATTGACTTCACACGCAACTACCTCGACGGTTCAATCCCTCCAGAATGGGGTACAATGCAACTAGTAAACATTTCTCTGATCGGAAACCGGTTAACGGGTTCGATTCCCAAAGAGCTTGGAAACATCTCTACTCTTGCAAACCTAACCGTAGAGTTCAATCAGCTTTCAGGGGTTCTTCCTCAGGAGCTTGGGAATCTGCCCAGTATAGAGAGAATACTTCTTACCTCAAACAACTTCACTGGGGAGTTACCACAAACATTTGCAGGGCTTACCACATTGAAGGACTTTCGGGTTGGAGATAATCAGTTCACAGGAAAGATACCCAATTTTATACAGAACTGGACAAAACTTGAAAAATTAGTGATTCAAGGGAGTGGTTTCAGTGGGCCGATTCCTTCTGGCATTGCCCTTTTGACAAAAATAACTGACTTGAGAATCAGTGACCTGAATGGAACTGAAGCAACTTTTCCACCATTGAGTGATATGAGAAACTTGAAAACTCTAATATTGAGGAGTTGCAATATTGTTGGCCCGCTACCTGATTACCTTGGGGAAATGACAAAATTGAAAACCCTAGATCTGAGTTTTAACAAACTAACTGGAGAAATTCCAAGCAGCTTTGTCGGTCTATCAAATGCAGATTACATGTATTTTACCGGAAACATGCTAACTGGAGCCGTGCCTGATTGGATGCTGAAAAGAGGAGACAACTATGATCTTTCATACAATAACTTTACTAGTGAAAGCTCAAGAGGATGTCAAGAACGGAGTGTAAATTTATTTGGAAGCTCATCAGGAGGAAATAACTTTGGAATTGTCTCGTGCTTGAGAAGCTTTAATTGCCCAAAAAAGTTTTACTCCATGCACATAAATTGTGGTGGAAAAGAAGTAATCGTTGATGGAAATACCACATATGAAGATGACACAGATTCTGGTGGACCATCAAAGTTCTATCAGAGTAGAACAAACTGGGCATTCAGCAGCACAGGTCACTTCATGGACGATGACCGTCCTACAGACTCCTTTATTGGGACAAATGTGTCTAGACTCACCATGGAAAATTCTGGACTGTATACAACCGCACGTCTCTCCGCCCTGTCTCTCACTTATTATGGATTCTGTCTGGAAAATGGAAACTACACAGTAAAGCTTCACTTTGCAGAGATCACCTTTACTGATGACAAAACATATAGCAGCCTTGGAAGGCGTTTGTTTGATGTTTATGTTCAGGATGAGCTGGTTCTCAAGGATTTCGATATTGAGGATGATGCAGGGGGTGTTAGCAAGGAAATCATAAAATATTTTACTGCTGTTGTGACTAATAATACCTTGGAAATTCGCTTCTATTGGGCTGGGAAAGGGACTACAGGTATCCCAGTTAGAGGAGTTTATGGTCCTCTTATATCAGCTATTTCTGTGGACCCTGATTTTATACCTCCTACCAAAAATGGAAGCAGTAGTAAATCTGTTGGCATTGTGGTTGGCCATGTGGCTGGAGTCATTCTTCTTGTCTTCCTGGTTATAGGTATCCTTTGGTGGAGAGGCTGCCTAAGGCGCAAAGATACGTTGGAACAAGAGTTAAAGGGTCTAGATCTGCAGACTGGTTTGTTTACCTTAAGGCAAATTAAGGCTGCCACAAACAACTTTGATGCTGCCAACAAAATTGGAGAAGGTGGATTTGGTTCTGTTTACAAGGGCGTCTTATCCGATGGCACCATAATTGCAGTGAAGCAGCTTTCTTCCAAATCAAAGCAAGGAAACCGTGAGTTTGTGAATGAGCTAGGCATGATTTCTGCTCTTCAACATCCTCATCTTGTGAAGCTCTATGGCTGTTGTATAGAAGGAAATCAGTTGTTGCTGATATACGAGTACATGGAAAATAACAGCCTCGCTCGTGCTTTGTTTGGCCCTGAAGAATGTCAATTACAGTTGGATTGGCCAACTAGACACAGGATCTGTGTTGGCATAGCAAGAGGGTTGGCTTATCTTCATGAAGAATCAAGGCTGAAGATCGTCCACCGAGACATCAAGGCCACAAATGTGCTTCTTGATAAGGATCTTAACCCCAAAATATCTGACTTTGGTTTGGCCAAACTTGATGAAGAGGATAACACCCACATTAGCACACGGATTGCTGGTACATTTGGATATATGGCACCTGAATATGCAATGCGGGGCTATTTAACTGACAAAGCAGATGTTTACAGTTTTGGAATTGTTGCCTTGGAAATTGTCAGTGGAAGAAGCAACACTACTTATAGGCCAAAAGAAGAATGCACCTATCTTCTTGATTGGGCACTCTCTTTAAAAGAGAAGGGGAACTTAATGGATCTAGTCGACCCCAGATTGGGCTCAGACTTCAACAAGGAAGAGGTCATGGCAATGCTCAACATAGCTCTCTTGTGCACGAACATCTCTTCAGCAGTCAGGCCAGCTATGTCATCAGTTGTGAGCATGCTTGAAGGCATAACTGCTGTTCAGGACATTGTTTCTGATCCCAGTGCTCCTAGTGATGACTTAAAGCTCAAGGAGATGAAGGAGCATTATCGCCACATCCAAGAAAAGAGCATGGATGTGAGCGAGAGCAAGGCTCAGAGCATGCCAGACGGGCCATGGACTGCTTCTTCATCCATCACTGACCTCTACCCAGTCACCTTGGATTCTGAATATTGGGAGAAGAGAGATTAA 3111 43.14 MPSINSLLSSLLIAFTFFTTLTFSATLLPNNEGDTTIHSTSFFIVLYIYSQKSILLLLHFTVEALEEIAETLGKTDWNFSADPCGGEWGWATKNPVKGSENAVTCSCTNNTVCHVVSIVLKTQNLPGSLPPELVKLPYLQEIDFTRNYLDGSIPPEWGTMQLVNISLIGNRLTGSIPKELGNISTLANLTVEFNQLSGVLPQELGNLPSIERILLTSNNFTGELPQTFAGLTTLKDFRVGDNQFTGKIPNFIQNWTKLEKLVIQGSGFSGPIPSGIALLTKITDLRISDLNGTEATFPPLSDMRNLKTLILRSCNIVGPLPDYLGEMTKLKTLDLSFNKLTGEIPSSFVGLSNADYMYFTGNMLTGAVPDWMLKRGDNYDLSYNNFTSESSRGCQERSVNLFGSSSGGNNFGIVSCLRSFNCPKKFYSMHINCGGKEVIVDGNTTYEDDTDSGGPSKFYQSRTNWAFSSTGHFMDDDRPTDSFIGTNVSRLTMENSGLYTTARLSALSLTYYGFCLENGNYTVKLHFAEITFTDDKTYSSLGRRLFDVYVQDELVLKDFDIEDDAGGVSKEIIKYFTAVVTNNTLEIRFYWAGKGTTGIPVRGVYGPLISAISVDPDFIPPTKNGSSSKSVGIVVGHVAGVILLVFLVIGILWWRGCLRRKDTLEQELKGLDLQTGLFTLRQIKAATNNFDAANKIGEGGFGSVYKGVLSDGTIIAVKQLSSKSKQGNREFVNELGMISALQHPHLVKLYGCCIEGNQLLLIYEYMENNSLARALFGPEECQLQLDWPTRHRICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTTYRPKEECTYLLDWALSLKEKGNLMDLVDPRLGSDFNKEEVMAMLNIALLCTNISSAVRPAMSSVVSMLEGITAVQDIVSDPSAPSDDLKLKEMKEHYRHIQEKSMDVSESKAQSMPDGPWTASSSITDLYPVTLDSEYWEKRD* 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 501305 518217 - Vvi19g45 Vvi19g45 781544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g45 1036 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 406 999 - -
Vvi19g45 1036 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 318 371 - -
Vvi19g45 1036 Gene3D Ribonuclease Inhibitor 254 400 IPR032675 -
Vvi19g45 1036 CDD STKc_IRAK 696 964 - -
Vvi19g45 1036 ProSiteProfiles Protein kinase domain profile. 690 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g45 1036 Gene3D - 426 616 - -
Vvi19g45 1036 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 318 371 - -
Vvi19g45 1036 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 406 999 - -
Vvi19g45 1036 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 102 317 - -
Vvi19g45 1036 ProSitePatterns Protein kinases ATP-binding region signature. 696 718 IPR017441 GO:0005524
Vvi19g45 1036 MobiDBLite consensus disorder prediction 994 1014 - -
Vvi19g45 1036 Gene3D Ribonuclease Inhibitor 60 183 IPR032675 -
Vvi19g45 1036 Gene3D Ribonuclease Inhibitor 184 253 IPR032675 -
Vvi19g45 1036 SMART serkin_6 690 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g45 1036 Pfam Leucine rich repeat 304 364 IPR001611 GO:0005515
Vvi19g45 1036 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 102 317 - -
Vvi19g45 1036 SUPERFAMILY L domain-like 102 371 - -
Vvi19g45 1036 SUPERFAMILY Protein kinase-like (PK-like) 674 975 IPR011009 -
Vvi19g45 1036 Gene3D Phosphorylase Kinase; domain 1 657 765 - -
Vvi19g45 1036 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Vvi19g45 1036 Gene3D Transferase(Phosphotransferase) domain 1 766 978 - -
Vvi19g45 1036 Pfam Malectin domain 428 612 IPR021720 -
Vvi19g45 1036 MobiDBLite consensus disorder prediction 1000 1014 - -
Vvi19g45 1036 Pfam Protein tyrosine and serine/threonine kinase 693 958 IPR001245 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76461 PF07714 PK_Tyr_Ser-Thr 5.00E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g45 - - vvi:100265805 1942.16