Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g450 ATGGAATCAGAGCCACCATTTGGGGAGTTCGTCAACAGTGTTTTTGGAAACATTGTAGAACAAGAGGAAACTGAAGCAAAGTTCGACGTGGATGAATGTGAACTACCGCTGATTGACCTAGGTCACTTGAATCTTGGCAACTTGGAGCATGAAGAGTGCAAGAGAAAGATTTGTGAAGCTTCTACTGAATGGGGCTTCTTCCAGATTGTCAACCATGGCGTTTCTAAAGAGATTTTGTCCAGGATTCATCGTGAGCAAGTGGAGTTGTTCCGGCAGCCATTCCAGATAAAGACTAATGAGAAGTTGCTGAACTTATCATCTGGCTGTTACCGCTGGGGAACGCAAACTGCTATTACTCAGAAGCAATTCGCATGGTCTGAAGCTTTTCACATCCCGCTTTCCACTATTTTCCAACTAAGTGAATTCGAAGGTCTCAGGTCAAGTCTTCAAGAGTTTGCAATTAAAGCTTCGGATCTCGCTCAACAAATAGCTAAAATATTGGCTGAGAATTTGGGCTGTAAATCCACTTTCTTTTTCAAGAATTGCTTGCCAAGTTCATGTTATATTCGAATGAACAGATATCCAGCATGTCCGGTGTCGTCTAAGGTTTTTGGATTAATCCCGCACACTGATAGTGACTTCCTCACAGTATTGCATCAAGATCAGGTGGGGGGATTGCAGCTCCTAAAAGATGGAAAATGGATTAGGGTTAAGCCTAATCCAGATGCTCTAGTTATCAACATTGGAGACTTATTTCAGGCTTGGAGCAATGGAGTTTATAAGAGTCTTGAACACCGAGTTGTTGCCAACCATGAAATTGAAAGGTTCTCTTTTGCATACTTCCTCTGTCCCTCTCATGACACCGTGATACAAAGTTGCTGTGAGCCTTCAATCTACAGAAAATTTAGCTTCAGAGAGTACAGACAGCAAGTTGAAGAGGATGTGAAGACCACAGGGGACAAGGTAGGGCTTTCAAGATTTCGCAGATGA 990 42.73 MESEPPFGEFVNSVFGNIVEQEETEAKFDVDECELPLIDLGHLNLGNLEHEECKRKICEASTEWGFFQIVNHGVSKEILSRIHREQVELFRQPFQIKTNEKLLNLSSGCYRWGTQTAITQKQFAWSEAFHIPLSTIFQLSEFEGLRSSLQEFAIKASDLAQQIAKILAENLGCKSTFFFKNCLPSSCYIRMNRYPACPVSSKVFGLIPHTDSDFLTVLHQDQVGGLQLLKDGKWIRVKPNPDALVINIGDLFQAWSNGVYKSLEHRVVANHEIERFSFAYFLCPSHDTVIQSCCEPSIYRKFSFREYRQQVEEDVKTTGDKVGLSRFRR* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5864697 5871371 - Vvi19g450 Vvi19g450 781949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g450 329 Gene3D - 10 316 IPR027443 -
Vvi19g450 329 Pfam 2OG-Fe(II) oxygenase superfamily 190 284 IPR044861 -
Vvi19g450 329 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 15 320 - -
Vvi19g450 329 Pfam non-haem dioxygenase in morphine synthesis N-terminal 35 131 IPR026992 -
Vvi19g450 329 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 8-LIKE 15 320 - -
Vvi19g450 329 SUPERFAMILY Clavaminate synthase-like 27 310 - -
Vvi19g450 329 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 183 284 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g450 - - K04125 vvi:100258946 677.167
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g450 . . . . . . Bma10g00535 Bma13g01030 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00735 Bda12g00891 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009622 1 2 0 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 3 1 3 33