Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g462 ATGGCCGCTCGACTACTGAGGAGGAAGGCTCTCACGAATCTCTCTGCTCCTTCGTCCTCTCCCTTCTCTAAATCATCCTTCTCAGTTCAGAGACTCATTAGCACGTTGGTTTTGGGTGAGCATGAAGGGGGCTCCATCAAGGCCCAATCTTTGAGTGCAGTAGTTGCTGCAAAGTTTTTGGGTGAGGACAATTCTATTTCTATGCTGCTGGCTGGGTCTGGTCCTTCAGTTCAAGAAGCTGCTATACATGCTGCCTCATGTTATTCTTCAATTTCTCAGGTAATTGTAGCTGATTCAGATAAATTTACATATCCTGTAGCAGAACCTTGGGCAAAACTAGTCCAGTTGATTCAGCAGAAAGGTGGCTACTCACACATAATGGCTACTTCAGGTTCATTTGGAAAAAACATACTACCACGGGCAGCTGCCCTTTTAGATGTTTCTCCAATTACCGATGTCATTGAAATTTCAGGACCTCAGCTATTTGTGAGGCCAATTTATGCTGGAAATGCTCTTTGCACTGTTCGATACACTGGTTCTGCGCCTTGTATGTTGACCGTTAGGTCAACATCTTTTCCAGTGCCACTGACATCAGCTAATTCAAAATCTGATGTGGCTCCAATTTCCCAGGTTGACCCCTCAACCTTTGGTGAAGATATGGTGTGCAAATCAAAATATTTAAGCCATACCTCTCAGGATTCAGAACGTCCAGATCTCGGTAATGCTCGTATTGTGGTCACTGGGGGCCGAGCGTTGAAAAGTGCTGAAAACTTCAAAATGATTGAGAAGCTTGCAGAAAAACTTGGTGCTGCAGTTGGTGCTACTCGTGCTGCTGTTGATGCGGGATTTGTTCCTAATGAACTCCAGGTTGGTCAAACTGGAAAGATCGTGGCCCCAGAATTGTATTTGGCTTTTGGTGTTTCAGGAGCCATTCAACATTTAGCAGGCATGAGAGATTCCAAGGTTATTGTTGCTGTGAACAAGGATGCAGATGCACCCATATTTCAGGTAGCTGATTATGGACTCGTGGGTGACCTGTTTGAAGTGATACCAGAGTTGTTAGAGAAGCTTCCTGAGAAAAAATAG 1086 44.66 MAARLLRRKALTNLSAPSSSPFSKSSFSVQRLISTLVLGEHEGGSIKAQSLSAVVAAKFLGEDNSISMLLAGSGPSVQEAAIHAASCYSSISQVIVADSDKFTYPVAEPWAKLVQLIQQKGGYSHIMATSGSFGKNILPRAAALLDVSPITDVIEISGPQLFVRPIYAGNALCTVRYTGSAPCMLTVRSTSFPVPLTSANSKSDVAPISQVDPSTFGEDMVCKSKYLSHTSQDSERPDLGNARIVVTGGRALKSAENFKMIEKLAEKLGAAVGATRAAVDAGFVPNELQVGQTGKIVAPELYLAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKLPEKK* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6053969 6060010 + Vvi19g462 Vvi19g462 781961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g462 361 Gene3D HUPs 34 234 IPR014729 -
Vvi19g462 361 PANTHER ELECTRON TRANSFER FLAVOPROTEIN ALPHA 24 359 IPR001308 GO:0009055|GO:0050660
Vvi19g462 361 SUPERFAMILY DHS-like NAD/FAD-binding domain 235 357 IPR029035 -
Vvi19g462 361 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 34 209 - -
Vvi19g462 361 ProSitePatterns Electron transfer flavoprotein alpha-subunit signature. 301 327 IPR018206 -
Vvi19g462 361 Gene3D - 235 360 - -
Vvi19g462 361 PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT ALPHA, MITOCHONDRIAL 24 359 - -
Vvi19g462 361 Pfam Electron transfer flavoprotein domain 35 212 IPR014730 -
Vvi19g462 361 CDD ETF_alpha 34 212 IPR033947 -
Vvi19g462 361 SMART ETF_2 35 220 IPR014730 -
Vvi19g462 361 PIRSF Electra_flavoP_a 31 361 IPR001308 GO:0009055|GO:0050660
Vvi19g462 361 Pfam Electron transfer flavoprotein FAD-binding domain 238 318 IPR014731 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g462 K03522 fixB, etfA; electron transfer flavoprotein alpha subunit - vvi:100243622 659.062
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g462 Blo03g00578 . Bda07g00344 . . . . . . . . Cma09g00935 . Car09g00848 Sed07g2661 Cpe06g00752 . Bhi09g01931 Tan01g4520 Cmetu04g0908 . Hepe01g1300 Mch11g1164 . . . . . . . . . Cone9ag0097 . . Lsi04g01229 . . . . . . . Bpe11g00529 . . Bma14g00352 . . Cmo09g00932 . . . . . . . . . . . . . Cla05g01520 Cam05g1633 . Cco05g1669 Clacu05g1622 Cmu05g1520 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009641 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 1 32