Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g464 ATGATCAGAAGTGGTGAAGATGAAGAAGGACGACCTCCTGGTACAGCGATAGTTATTGCAACATCTGTGTGGGTTCCTGCATCACCAAGGAGGGTTTTTGATTTCCTCCATGATGTGCATACACGAAATAGGTGGGATATTCTTACTTGTGGACATGTTGTTAAAGAAACTGGACACATTGATAATGGTTGTGATCATGGAAACCGAGTTTCTATATTGGAAGTGAAGTCTCCAGAGGACCAGATCGTTGTAATACTTCTTCAAGAGAGCTATACTACTTTTACAAGCTCTTATGTAACTTTTGCACCTGTTGAAGCTTGTACCCTGGATATGATCCTAAATGGAGGCAGCCCGGATCATGTGCCCATCTTGCCCTCGGGGTTTTCTATTCTTCCTGATGGGCCAACGAGGGATGGAGGGAGCGGAAGTCTTGTGACAATGGCATTTCAGATCTTGGATAATTCCTCGTCTGCTACATATATCCCTCCTGAATCAGTAGCGACTATTTTTAAACTCGTAACAGAGACTGCTGAGTGCATCAAGGCCGCAATGTTTAGTCCATCAAACTTGGGAACATGA 579 43.87 MIRSGEDEEGRPPGTAIVIATSVWVPASPRRVFDFLHDVHTRNRWDILTCGHVVKETGHIDNGCDHGNRVSILEVKSPEDQIVVILLQESYTTFTSSYVTFAPVEACTLDMILNGGSPDHVPILPSGFSILPDGPTRDGGSGSLVTMAFQILDNSSSATYIPPESVATIFKLVTETAECIKAAMFSPSNLGT* 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6077330 6085291 + Vvi19g464 Vvi19g464 781963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g464 192 SUPERFAMILY Bet v1-like 14 166 - -
Vvi19g464 192 PANTHER PROTEIN FWA, PUTATIVE-RELATED 1 186 - -
Vvi19g464 192 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 186 IPR042160 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g464 K09338 HD-ZIP; homeobox-leucine zipper protein - vvi:104877581 385.185
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g521 Vvi19g464 ECH
Vvi10g26 Vvi19g464 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g464 . . . . . . . . . . Cma01g01144 . . . . . Cpe02g00755 . . . . . . . . . . . . . . . . . . Lsi04g01227 . . . . . . . . . . . . Cmo01g01197 . . . . Car16g00556 . . . . . . . . . Cla05g01515 Cam05g1629 Cec05g1633 Cco05g1662 Clacu05g1614 Cmu05g1514 . . . . Cme04g00844
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023741 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2