Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g468 ATGTGGGTCTCTGCAGTCTCACTTCACCATTTCTCATTGACAAACTCTTCCCAATTCGACAACCCAAACAACCTCATCACAAGATGGAAGCCCGAGTTCACTTCAGTAAGGTGCAGTACCAGCACTGCAGGTCGAAGAAGCGCGAGAACAAGGAAGAGTTACCATGAGTTGCTTGGAGATTCTGTTGACTCAAATACTCAGCAGATCAAAGAAGCTTACAGGAAGCTTCAAAAGAAATATCACCCAGATGTTGCAGGCGAAAAGGGACATGAGTACAGTTTGATGCTGAATGAGGCGTATGGGGTTCTGGCATGGGAAGATCTCAGAAGAGAGTATGATGCTTCAATCGGCCAAATGAGAGTGGGGTTTTGGGGAAGCTTTTCTGGCTTGGGTTACCGTTCATGGAAAGGCCCCTTAAGACCCCAAGCATCTATAGGTAGCAGAGAATGCGTCCACCATGCAGGTAACACTTTTGTGATGGTAGATGCTCTTGGGTGTGCAAGAGTCAAAGTTCGGTATGGAGATGATGACAAGAAAATTGAGGTTTGGGTTGATTCATGCCTAGTAAACTGGATTCACTGGGTGGATAGGGAAGAGTTAGCAATACTAAAGTTCCTGATTCAGCCTCAACCTCAGGAAGGCTATGGTGTTTTTGGAGGAGGATGGGAAAGACCTGCAATTGTTTTCATGGCAGCCAAGCCCTCCAAAAAGCGGCCCAATCAGCAGGATGACTACAATCGAATGAATGCATCCAGAGAAGAAAAGACTTCCAATTCATTTGTGGAAAAAGTGAAGGAAATTGTCAGTAGTCGTGTTGCTTTTCTGGTGGGACTCGTCTCAGAAAAAGGAAAATGA 855 45.5 MWVSAVSLHHFSLTNSSQFDNPNNLITRWKPEFTSVRCSTSTAGRRSARTRKSYHELLGDSVDSNTQQIKEAYRKLQKKYHPDVAGEKGHEYSLMLNEAYGVLAWEDLRREYDASIGQMRVGFWGSFSGLGYRSWKGPLRPQASIGSRECVHHAGNTFVMVDALGCARVKVRYGDDDKKIEVWVDSCLVNWIHWVDREELAILKFLIQPQPQEGYGVFGGGWERPAIVFMAAKPSKKRPNQQDDYNRMNASREEKTSNSFVEKVKEIVSSRVAFLVGLVSEKGK* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6129790 6131464 + Vvi19g468 Vvi19g468 781967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g468 284 PRINTS DnaJ domain signature 55 73 IPR001623 -
Vvi19g468 284 PRINTS DnaJ domain signature 73 88 IPR001623 -
Vvi19g468 284 PANTHER 3FE-4S FERREDOXIN 15 262 - -
Vvi19g468 284 SMART dnaj_3 52 108 IPR001623 -
Vvi19g468 284 SUPERFAMILY Chaperone J-domain 50 135 IPR036869 -
Vvi19g468 284 CDD DnaJ 54 103 IPR001623 -
Vvi19g468 284 Gene3D - 141 197 - -
Vvi19g468 284 MobiDBLite consensus disorder prediction 233 257 - -
Vvi19g468 284 Gene3D DnaJ domain 38 121 IPR036869 -
Vvi19g468 284 MobiDBLite consensus disorder prediction 237 257 - -
Vvi19g468 284 PANTHER CHAPERONE PROTEIN DNAJ C76, CHLOROPLASTIC 15 262 - -
Vvi19g468 284 ProSiteProfiles dnaJ domain profile. 53 116 IPR001623 -
Vvi19g468 284 Pfam DnaJ domain 54 113 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g468 - - - vvi:100855066 581.252
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g468 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .