Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g469 ATGTGGGTCTCTGAAGTCTCACTTCACCATTTCTCATTGCCAAACTCTTCCCAATTCGACATCCCAAACAACCTCACCACAAGATGGAGGCACAAGTTCACTTCAGTAAGGTGCAGTAGCAGAAGTGATGGTCAAAGTGCAAGAACAAGGAAGAGTTACTATGAGTTGCTTGGAGTTTCTGTTGATTCAAATCCCCAGGAGATCAAAGAAGCTTACAGGAAGCTTCAAAAGAAATATCACCCAGATGTTGCAGGCCAAAAGGGACATGAGTACAGTTTGATGCTGAATGAGGCGTATAGGGTTCTGGCAAGGGAAGATCTCAGAAGAGAGTATGACGCTTCAATCGGCAAAATGAGAGTGGGGTTTGGGGGAATCTTTTCTGGCATGGGTTACAGTGCATGGAAAGGCCCCTTGAGACCCCAAGCTCTGTTTGTTGATGAAAATAAATGCATAGGTTGCAGAGAATGTGTCCACCATGCAGGTAACACTTTTGTAATGGATGATGCTCTTGGGTGCGCAAGAGTCAAGGTTCAATATGGAGATGATGACAAGAAAATTGAGGTTTCGGTTGATTCATGCCCAGTAAACTGCATTCACTGGGTGGATAGGGAAGAGTTGGCAATACTTGAGTTCCTGATTCAGCCTCAACCCAAGGAAGGTTATGGTGTTTTTGGAGGAGGATGGGAAAGGCCTGCAAATGTTTTCATGGCTGCTAAGGCCTTCAACAAGCAACTGAAACAGCAGGCTGACCATCATCAAAGAAATGCATCCAGAACCGTTGAAGAAGAGACTCCAGCTCAGGCAGAGGCTCGGGCCAATGCAAGTATGAAAATAAAGATGGAGAGATTATCAAGGATTTGGAATTGGGTGAAGGAAGTCTCTGGCTCCAACAAGGCAAATAAAGAGTAA 909 44.99 MWVSEVSLHHFSLPNSSQFDIPNNLTTRWRHKFTSVRCSSRSDGQSARTRKSYYELLGVSVDSNPQEIKEAYRKLQKKYHPDVAGQKGHEYSLMLNEAYRVLAREDLRREYDASIGKMRVGFGGIFSGMGYSAWKGPLRPQALFVDENKCIGCRECVHHAGNTFVMDDALGCARVKVQYGDDDKKIEVSVDSCPVNCIHWVDREELAILEFLIQPQPKEGYGVFGGGWERPANVFMAAKAFNKQLKQQADHHQRNASRTVEEETPAQAEARANASMKIKMERLSRIWNWVKEVSGSNKANKE* 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6133006 6134820 + Vvi19g469 Vvi19g469 781968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g469 302 Coils Coil 242 262 - -
Vvi19g469 302 Pfam DnaJ domain 53 112 IPR001623 -
Vvi19g469 302 PANTHER 3FE-4S FERREDOXIN 17 298 - -
Vvi19g469 302 SUPERFAMILY 4Fe-4S ferredoxins 143 202 - -
Vvi19g469 302 ProSiteProfiles dnaJ domain profile. 52 115 IPR001623 -
Vvi19g469 302 CDD DnaJ 53 102 IPR001623 -
Vvi19g469 302 PRINTS DnaJ domain signature 54 72 IPR001623 -
Vvi19g469 302 PRINTS DnaJ domain signature 72 87 IPR001623 -
Vvi19g469 302 Pfam 4Fe-4S single cluster domain of Ferredoxin I 145 200 - -
Vvi19g469 302 PANTHER CHAPERONE PROTEIN DNAJ C76, CHLOROPLASTIC 17 298 - -
Vvi19g469 302 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 141 169 IPR017896 -
Vvi19g469 302 SUPERFAMILY Chaperone J-domain 49 138 IPR036869 -
Vvi19g469 302 SMART dnaj_3 51 107 IPR001623 -
Vvi19g469 302 Gene3D - 141 203 - -
Vvi19g469 302 Gene3D DnaJ domain 36 120 IPR036869 -
Vvi19g469 302 MobiDBLite consensus disorder prediction 248 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g469 - - - vvi:100854700 626.706
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g471 Vvi19g469 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g469 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012552 0 2 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28