Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g477 ATGGCTCCCGCTGCTCCAAGATCTGGAGATGCAATATTCGCTAACGTTGAGCGCGTGAATGCGGAACTGTTCACACTAACCTATGGTGCGATCGTGCGTCAACTGCTTACGGATCTGGAGGAGGTTGAAGAAGTCAACAAACAGCTCGATCAAATGGGTTATAATATTGGAATTCGATTGATTGATGAGTTTCTAGCAAAATCTAACGTCTCCAGATGCGTCGACTTCAAGGAGACAGCTGAAGCAATTGCAAAGGTTGGTTTCAAAATGTTCTTGGGGGTCACTGCATCAGTGACCAATTGGGATGCTGATGGTACAAGTTGCAGTCTTGTTTTGGAGGATAATCCACTGGTAGATTTTGTTGAGCTTCCTGATACTTGTCAAGGTCTGTACTACTGCAACATCTTGAGTGGAGTTGTTAGAGGAGCTCTAGAAATGGTGTCAATGAAGACTGAAGTCACATGGATCCGTGATATGCTTCGAGGGGATGATGCTTATGAGTTGCAGGTAAAACTTCTGAAGCAAGTTCCAGAAGAATACCCTTACAAAGATGACGAGTAA 561 44.21 MAPAAPRSGDAIFANVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVSRCVDFKETAEAIAKVGFKMFLGVTASVTNWDADGTSCSLVLEDNPLVDFVELPDTCQGLYYCNILSGVVRGALEMVSMKTEVTWIRDMLRGDDAYELQVKLLKQVPEEYPYKDDE* 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6198077 6205568 - Vvi19g477 Vvi19g477 781976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g477 186 Gene3D Trafficking protein particle complex subunit 3 2 185 - -
Vvi19g477 186 PIRSF TRAPP_1_Bet3 3 185 IPR016721 GO:0030008|GO:0048193
Vvi19g477 186 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 18 176 IPR024096 -
Vvi19g477 186 CDD TRAPPC3_bet3 20 174 IPR016721 GO:0030008|GO:0048193
Vvi19g477 186 Pfam Transport protein particle (TRAPP) component 24 171 IPR007194 -
Vvi19g477 186 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 1 186 IPR016721 GO:0030008|GO:0048193
Vvi19g477 186 Coils Coil 32 52 - -
Vvi19g477 186 PANTHER PROTEIN PARTICLE COMPLEX SUBUNIT, PUTATIVE-RELATED 1 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g477 K20302 TRAPPC3, BET3; trafficking protein particle complex subunit 3 - vvi:100241885 372.474
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g477 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005840 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 4 3 1 38